PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016623m
Common NameCISIN_1g007099mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 387aa    MW: 41162 Da    PI: 7.9993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016623mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.4e-31128186259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  orange1.1g016623m 128 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 186
                        7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-33112188IPR003657WRKY domain
SuperFamilySSF1182907.45E-28120188IPR003657WRKY domain
PROSITE profilePS5081129.516122188IPR003657WRKY domain
SMARTSM007741.5E-36127187IPR003657WRKY domain
PfamPF031061.4E-26129186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MVPRQFIGLG PSAETDHEVS NCSSDEERTL SGTPPNIVEA ASKEHVNSNG KNEIVSFDDQ  60
AAAAAAAENS NGKRIGREES PESETQGWGP NNKVQKLSSA KGIDQSNEAT MRKARVSVRA  120
RSEAPMITDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCAE DRTILITTYE  180
GNHNHPLPPA AMAMASTTTA AASMLLSGSM SSADGIMNPN LLARAILPCS SSMATISASA  240
PFPTVTLDLT HSPNPLQLQR QAAQFQVQFP GQPQNLASVT NTQLPQVFGQ ALYNQSKFSG  300
LQLSQNIGSN SQSGSHQTLP PPLQQPQQLA DTVSAATAAI TADPNFTAAL AAAITSIIGG  360
AQNPFSNNSN NNNRSCIIFT NFFFQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-23114190176WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.10530.0fruit| vegetative meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467403.10.0probable WRKY transcription factor 31
SwissprotQ9XEC31e-122WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A067GFB60.0A0A067GFB6_CITSI; Uncharacterized protein
TrEMBLA0A067GI220.0A0A067GI22_CITSI; Uncharacterized protein
TrEMBLA0A067GSK90.0A0A067GSK9_CITSI; Uncharacterized protein
STRINGXP_006467403.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-95WRKY family protein