PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g016577m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 388aa MW: 42766.4 Da PI: 6.8399 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.2 | 5.2e-17 | 336 | 382 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq orange1.1g016577m 336 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 382 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.58E-19 | 330 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.11E-16 | 335 | 386 | No hit | No description |
Pfam | PF00010 | 2.5E-14 | 336 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-19 | 336 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-18 | 338 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MNPCIPDWNF EGDIPISNQM KPMGQDNELV ELLWQNGHVV LSSQAQTQRK PSLNHNEPRQ 60 VQKQTLRGSG SCGNSSNLIQ DDETVSWIHC PIEDSFEKDF YSQLFSELPP SGPMEVDKHT 120 RQLREEKMVK FDPPGAVTSS QHPNVNHSVV PELQRNAMPP PRFEVHDAAP QNKNLGDLGK 180 LVNFSQSTAP PKGELGPCSG QFDRKRSGNL TQGEVRECSM MTVGSSHCGS NQVAYDLDMS 240 RASSSGLNDD VRKVISPSER GKTETIEPTV TSSSGGSGSS FNRTSKQSTG DNSLKRKSRD 300 AVDSECQSEA AGFESGAGNK TAQRSGSCRR SRAAEVHNLS ERRRRDRINE KMRALQELIP 360 HCNKTDKASM LDEAIEYLKS LQLQLQV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 345 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387762.2 | 0.0 | transcription factor PIF4-like isoform X2 | ||||
TrEMBL | A0A2H5QE64 | 0.0 | A0A2H5QE64_CITUN; Uncharacterized protein | ||||
STRING | XP_006485007.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 2e-38 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g016577m |