PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016553m
Common NameCISIN_1g016553mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 388aa    MW: 43930.6 Da    PI: 6.2292
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016553mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box223.4e-071961339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        r C+ +++  + l+C+ +   lC  C  e H+       H++
  orange1.1g016553m 19 GRLCDYCNDRVAVLYCRADTAKLCLFCDKEVHSTnqlfskHSR 61
                       689*****************************66777777776 PP
2zf-B_box27.94.7e-0961109242
           zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvpl 42 
                        + + C+ ++  ++++fCe+ ++ lC +C  e+H++        H+++p+
  orange1.1g016553m  61 RSQLCDVCDASPASIFCETEHSVLCTNCDWESHSQsnlrvssvHNRRPI 109
                        5689*****************************7788999999988876 PP
3CCT621.9e-21343385143
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        R+ al+RYkeK+ktR+++K++rYesRK++AesR R+KGrF+k 
  orange1.1g016553m 343 RDSALSRYKEKKKTRRYDKHVRYESRKVRAESRTRIKGRFAKI 385
                        899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.5661764IPR000315B-box-type zinc finger
SMARTSM003363.7E-131764IPR000315B-box-type zinc finger
PfamPF006438.0E-61862IPR000315B-box-type zinc finger
CDDcd000211.21E-62064No hitNo description
PROSITE profilePS5011910.56660109IPR000315B-box-type zinc finger
PfamPF006436.1E-662108IPR000315B-box-type zinc finger
CDDcd000218.55E-664109No hitNo description
SMARTSM003360.2965109IPR000315B-box-type zinc finger
PfamPF062039.1E-16343384IPR010402CCT domain
PROSITE profilePS5101714.574343385IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTGATQATEH EQRQDQRKGR LCDYCNDRVA VLYCRADTAK LCLFCDKEVH STNQLFSKHS  60
RSQLCDVCDA SPASIFCETE HSVLCTNCDW ESHSQSNLRV SSVHNRRPIE SFSGCPSVNE  120
MFAIIGFDDL DSKALFLNDE TRNYSHFDGV DSDGFSDLFA WETPDFVSLD DLIVSSNAGH  180
NFQAIGVPPL PKNRNAAGGQ HKEEMLHQLR QLAKLDPNFK YENANIDEPI VGFHSLVPEP  240
ISQPGNMNTG SELDAEPNRF PAYEASTLQW FGDSFDHANQ LPSTLFKSCK EESFIVPEKH  300
FDTDGFVKNI NEGGEGQSQH PTNTEKSSVF HRVSVHELNS QERDSALSRY KEKKKTRRYD  360
KHVRYESRKV RAESRTRIKG RFAKIDH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444238.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_024045635.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A067H8R20.0A0A067H8R2_CITSI; Uncharacterized protein
TrEMBLV4TAX40.0V4TAX4_9ROSI; Uncharacterized protein
STRINGXP_006444238.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81482736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-104B-box type zinc finger protein with CCT domain