PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g016443m

Common Name

CISIN_1g015261mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 390aa MW: 43997.9 Da PI: 5.8292

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g016443m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	46	70	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ L +H+++ H orange1.1g016443m 46 YSCGLCGKGYRSSKALAQHLNSrsH 70 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.6E-4	46	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12874	7.7E-4	46	70	No hit	No description
SMART	SM00355	0.12	46	70	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.55E-6	46	77	No hit	No description
PROSITE profile	PS50157	9.868	46	75	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	70	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.93E-5	149	226	No hit	No description
Pfam	PF12756	2.2E-25	164	265	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	213	240	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MWKIFLFLLL PIKQVAGVPG VTEALFLARQ AALAQEKNKN ATPMTYSCGL CGKGYRSSKA 60 LAQHLNSRSH IMRASQGTSN EEKEKVIIKP IPLRDVNKPP RKREANNEES EDSDDEWEEV 120 GPDEVLVSEA TNSLTNLNVG SPADDDLEED DDDGAFEEFD PACCFMCDLP HDAIENCMVH 180 MHKCHGFFIP DVEYLKDPKG LLTYLGLKVK RDFMCLYCND RCHPFNSLEA VRKHMEAKRH 240 CKIHFGDGDD EEEAELEEFY DYSSSYMDED GKQLISSSDM ANTVELGGGS ELIITKRTDK 300 GTSTKTFGSR EYLRYYRQKP RPSPANNVAI TAALASRYKS MGLATVQTRE HMVRMKVIKE 360 MNRTGVEAMR TRVGMKNNII RNLPKNVPY*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MWKIFLFLLL PIKQVAGVPG VTEALFLARQ AALAQEKNKN ATPMTYSCGL CGKGYRSSKA  60
LAQHLNSRSH IMRASQGTSN EEKEKVIIKP IPLRDVNKPP RKREANNEES EDSDDEWEEV  120
GPDEVLVSEA TNSLTNLNVG SPADDDLEED DDDGAFEEFD PACCFMCDLP HDAIENCMVH  180
MHKCHGFFIP DVEYLKDPKG LLTYLGLKVK RDFMCLYCND RCHPFNSLEA VRKHMEAKRH  240
CKIHFGDGDD EEEAELEEFY DYSSSYMDED GKQLISSSDM ANTVELGGGS ELIITKRTDK  300
GTSTKTFGSR EYLRYYRQKP RPSPANNVAI TAALASRYKS MGLATVQTRE HMVRMKVIKE  360
MNRTGVEAMR TRVGMKNNII RNLPKNVPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6rzz_u	6e-17	164	352	164	362	Cytoplasmic 60S subunit biogenesis factor REI1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6841	0.0	flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450152.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Refseq	XP_006483574.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Swissprot	Q8H1G5	1e-157	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A067FMC6	0.0	A0A067FMC6_CITSI; Uncharacterized protein
STRING	XP_006483574.1	0.0	(Citrus sinensis)
STRING	XP_006450152.1	0.0	(Citrus clementina)

Link Out ? help Back to Top
Phytozome	orange1.1g016443m

Publications ? help Back to Top
Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]