PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016435m
Common NameCISIN_1g016435mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 390aa    MW: 44525.1 Da    PI: 5.5655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016435mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.11.8e-3251333128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        +GfrFhPtdee++   L+ k ++ + +++ ++ike+d+y++eP++Lp  + +++ee+ wyfF++   k++++kr +r tk+gyWk+tg+  +
  orange1.1g016435m   5 VGFRFHPTDEEIIL-LLTMKRRDPTgFSV-RTIKEIDLYSFEPRELPchSDIQSEEEVWYFFCEPCYKNSESKRVHRRTKEGYWKKTGRGSN 94 
                        7************5.45555554443777.78***************6448888999*********************************** PP

                NAM  92 vlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        + +k k+e++g+kk L f +   a + + t+Wv+he ++
  orange1.1g016435m  95 INRKyKTEVIGTKKFLSFSRDdAAAQKNTTEWVIHEIAV 133
                        **9988999**********76356667899******875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.6833151IPR003441NAC domain
SuperFamilySSF1019414.05E-354151IPR003441NAC domain
PfamPF023656.8E-175131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MDSLVGFRFH PTDEEIILLL TMKRRDPTGF SVRTIKEIDL YSFEPRELPC HSDIQSEEEV  60
WYFFCEPCYK NSESKRVHRR TKEGYWKKTG RGSNINRKYK TEVIGTKKFL SFSRDDAAAQ  120
KNTTEWVIHE IAVEDSPDFK KDFVVCRLER KREKKTLGVV STKRKREKTL GVVSSKRKRD  180
KKLGVSTSDG DQSCQNLTSK RSHVAEDSNR NHVAEKVDLV STRNHVAENI VLVPEPQVRD  240
HSISCYRNHV AENIVEDSVE AETRRLAELN RRGDGYDGRN DASVSAVQSS DYPEQESSDY  300
NGSSCGSGLL NSQLDGEQVG GQCNSRRDFQ NEYSPEETGE TTPYFLTSKS DEGVYVEDGS  360
DANSETESFN EWVNMVFDYQ ILKEDIRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-17615220166NO APICAL MERISTEM PROTEIN
1ut4_B9e-17615220166NO APICAL MERISTEM PROTEIN
1ut7_A9e-17615220166NO APICAL MERISTEM PROTEIN
1ut7_B9e-17615220166NO APICAL MERISTEM PROTEIN
3swm_A1e-16615223169NAC domain-containing protein 19
3swm_B1e-16615223169NAC domain-containing protein 19
3swm_C1e-16615223169NAC domain-containing protein 19
3swm_D1e-16615223169NAC domain-containing protein 19
3swp_A1e-16615223169NAC domain-containing protein 19
3swp_B1e-16615223169NAC domain-containing protein 19
3swp_C1e-16615223169NAC domain-containing protein 19
3swp_D1e-16615223169NAC domain-containing protein 19
4dul_A9e-17615220166NAC domain-containing protein 19
4dul_B9e-17615220166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162181KRKREKTLGVVSSKRKRDKK
2163178RKREKTLGVVSSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956729.10.0NAC domain-containing protein 71-like
RefseqXP_024957218.10.0NAC domain-containing protein 71-like
TrEMBLA0A067DZ100.0A0A067DZ10_CITSI; Uncharacterized protein
STRINGXP_006485380.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.15e-27NAC domain containing protein 71