PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016393m
Common NameCISIN_1g016393mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 391aa    MW: 41698.9 Da    PI: 6.5051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016393mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-192272256
                AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                       ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  orange1.1g016393m 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRGA 72
                       689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-132271IPR001471AP2/ERF domain
PROSITE profilePS5103220.6792279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-292279IPR001471AP2/ERF domain
SMARTSM003801.8E-352285IPR001471AP2/ERF domain
CDDcd000181.50E-202279No hitNo description
PRINTSPR003677.3E-82334IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-202379IPR016177DNA-binding domain
PRINTSPR003677.3E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MGAVGENNVR GRKKSSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEEAAR  60
AYDDAARALR GANARTNFEL PDQTQTHSQL SNSNNRFLAD IINNNNNIEP FSFDQVCGSG  120
NEADGLLGAL KAKLFDFDGS TNTVTAVVLP QPQTQPQPPN NSTSGVAYTA TTSTNNSSSI  180
VAVPPREEVG LLLVSGNNNS NNCSIINSSG WSAAVAAAGK VDHHLIVDHQ VVAAAGHAYN  240
VGLQCQWHHP NIPPAQTSST TNMVWSTTEP TAGYEVSWST QMNRALSPEN IPLVTSTSVA  300
TTTAASTWPV SSGLTSNSTT VDFSFSDHYQ SAKMSTVSVG MPMTQIHGST TEGVCSSDQQ  360
FLHFENKAWT ASAATPASWD PLLYMSSPLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1520781271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A067GAV00.0A0A067GAV0_CITSI; Uncharacterized protein
STRINGXP_006439172.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-20related to AP2 11