PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016378m
Common NameCISIN_1g016378mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 391aa    MW: 44971.6 Da    PI: 4.3837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016378mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35151072103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k ye+++de+++++isw ++++sfv++d +ef+ ++Lp+yFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F +++k+l
  orange1.1g016378m  15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRDQKHL 97 
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i r+k++
  orange1.1g016378m  98 LNNICRRKNT 107
                        *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-37798IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5611104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVKSNDDGSN SVAPFLNKCY EMVDDESTDS IISWGQSNES FVIWDVTEFS VQLLPRYFKH  60
SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRDQKHLLNN ICRRKNTQGS EQRKSLQQSE  120
KLVEPCEKID HSALWKEVEN LKAGKNALTQ ELLKLRQYQE TADNKLLLLR DRVQGMEKSQ  180
QQMLSFLVMA MQNPSFLVQL LQPKENNWRM AEAGTMLEEV TEVGEPIASD NMLVRYHPPI  240
DETPKPVLKP VTDSGNQMAS DTSDGMKDVF MNIDFLKMLM DENQAPFIPL DLHNDGEWEK  300
LLLANPILDN SEDTQVDKDK EVDKEGHTDV DMEAEPAVSG SELERLNNLE LLLQELDKSQ  360
NFDNELENAR HLEFLTQKIE LLASESNYKL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22210416129Heat shock factor protein 1
5d5v_B1e-22210416129Heat shock factor protein 1
5d5v_D1e-22210416129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.76660.0fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448139.10.0heat stress transcription factor A-8
SwissprotQ9S7U51e-119HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A067FBG60.0A0A067FBG6_CITSI; Uncharacterized protein
STRINGXP_006448138.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-117heat shock transcription factor A8