PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g016283m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 393aa MW: 43822.3 Da PI: 6.0107

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g016283m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.8e-53	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp +k +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev orange1.1g016283m 18 LPPGFRFHPTDEELITFYLASKVFNGTFCG-VEIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV 108 79***********************877.45***********8888899*********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +g+l g+kktLvfykgrap+gekt+Wvmheyrl orange1.1g016283m 109 CSGsSGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 145 9867888**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-63	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.333	18	167	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MEDVLSELNG DEVNEQGLPP GFRFHPTDEE LITFYLASKV FNGTFCGVEI AEVDLNRCEP 60 WELPDVAKMG EKEWYFFSLR DRKYPTGLRT NRATGAGYWK ATGKDREVCS GSSGALLGMK 120 KTLVFYKGRA PRGEKTKWVM HEYRLDGDFS YRHTCKEEWV ICRIFNKAVV SGEKKNGLLL 180 QGQHYLFEAA ATAGACLPAL LDAPGPATTT LLLECQSQNH NPILENLPNH FVNQQQDNHH 240 HHLFPVNGLF ETSAVTNKHI LINNITENIG NNTSPSMLFK ALLSHQDFSC CNELAPSPKH 300 CKTEANFSHI QLPPATAADD NSNDNWSNCY WMDSKIQPNP YSNPLFSEFD CSFPGLTQPS 360 AFAATAVNDM STSIAFNRTG FQVVEKSWPL GA*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MEDVLSELNG DEVNEQGLPP GFRFHPTDEE LITFYLASKV FNGTFCGVEI AEVDLNRCEP  60
WELPDVAKMG EKEWYFFSLR DRKYPTGLRT NRATGAGYWK ATGKDREVCS GSSGALLGMK  120
KTLVFYKGRA PRGEKTKWVM HEYRLDGDFS YRHTCKEEWV ICRIFNKAVV SGEKKNGLLL  180
QGQHYLFEAA ATAGACLPAL LDAPGPATTT LLLECQSQNH NPILENLPNH FVNQQQDNHH  240
HHLFPVNGLF ETSAVTNKHI LINNITENIG NNTSPSMLFK ALLSHQDFSC CNELAPSPKH  300
CKTEANFSHI QLPPATAADD NSNDNWSNCY WMDSKIQPNP YSNPLFSEFD CSFPGLTQPS  360
AFAATAVNDM STSIAFNRTG FQVVEKSWPL GA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	11	167	10	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	11	167	10	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	11	167	10	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	11	167	10	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-51	11	167	13	168	NAC domain-containing protein 19
3swm_B	1e-51	11	167	13	168	NAC domain-containing protein 19
3swm_C	1e-51	11	167	13	168	NAC domain-containing protein 19
3swm_D	1e-51	11	167	13	168	NAC domain-containing protein 19
3swp_A	1e-51	11	167	13	168	NAC domain-containing protein 19
3swp_B	1e-51	11	167	13	168	NAC domain-containing protein 19
3swp_C	1e-51	11	167	13	168	NAC domain-containing protein 19
3swp_D	1e-51	11	167	13	168	NAC domain-containing protein 19
4dul_A	1e-51	11	167	10	165	NAC domain-containing protein 19
4dul_B	1e-51	11	167	10	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.
Uniprot	TISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269\|PubMed:12837947}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435428.1	0.0	protein CUP-SHAPED COTYLEDON 3
Swissprot	Q9S851	1e-102	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	V4SLQ3	0.0	V4SLQ3_9ROSI; Uncharacterized protein
STRING	XP_006435428.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-104	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g016283m

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]