PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g016130m | ||||||||
Common Name | CISIN_1g016130mg, LOC102623181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 395aa MW: 42105.6 Da PI: 8.0437 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.9 | 5e-40 | 75 | 180 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 +k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ orange1.1g016130m 75 VPKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAThlrn 166 689******************************************************************99976666666666333333333 PP TCP 89 .............k 89 + orange1.1g016130m 167 tyfnpnfgsqqlmR 180 33333333333330 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-41 | 79 | 256 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.629 | 81 | 135 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010252 | Biological Process | auxin homeostasis | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 395 aa Download sequence Send to blast |
MINMDDKNGI RRPNFPLQLL EKSQQQEASC SFSSSGFPSL TTRIAGGIDD DNNVNEQSSK 60 GFSESSAAAA AKKPVPKRTS TKDRHTKVEG RGRRIRMPAA CAARVFQLTR ELGHKSDGET 120 IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS ATHLRNTYFN PNFGSQQLMR 180 NMRSEWERTL IDNNCNSLSF PLTGGNVNAM LQSNKQELRD NNTIATTTTS LDVSEADTGM 240 GRKRRPDQEL SQNNQMGSYL VQSSTGSIPA SHSTIPATFW MMTNPSNNQV MSGAGESMWT 300 FPSVSNSNMY RGSMSSGGVH FVNLPTPMAL LPGQQLGSGI GSSGGTDSHL GMLAALNAYR 360 NISGAAVSES PACASHPHHG AGGDDGQDST SHHS* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00224 | DAP | Transfer from AT1G69690 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438669.1 | 0.0 | transcription factor TCP15 | ||||
Refseq | XP_006483179.1 | 0.0 | transcription factor TCP15 | ||||
TrEMBL | A0A067GTD4 | 0.0 | A0A067GTD4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4VH63 | 0.0 | V4VH63_9ROSI; Uncharacterized protein | ||||
STRING | XP_006483179.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006438669.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3915 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-48 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g016130m |
Entrez Gene | 102623181 |