PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016130m
Common NameCISIN_1g016130mg, LOC102623181
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 395aa    MW: 42105.6 Da    PI: 8.0437
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016130mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.95e-4075180289
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                         +k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++    
  orange1.1g016130m  75 VPKRTSTKDRHTKVEGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAThlrn 166
                        689******************************************************************99976666666666333333333 PP

                TCP  89 .............k 89 
                                     +
  orange1.1g016130m 167 tyfnpnfgsqqlmR 180
                        33333333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-4179256IPR005333Transcription factor, TCP
PROSITE profilePS5136927.62981135IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MINMDDKNGI RRPNFPLQLL EKSQQQEASC SFSSSGFPSL TTRIAGGIDD DNNVNEQSSK  60
GFSESSAAAA AKKPVPKRTS TKDRHTKVEG RGRRIRMPAA CAARVFQLTR ELGHKSDGET  120
IEWLLQQAEP AVIAATGTGT IPANFTSLNI SLRSSGSSMS ATHLRNTYFN PNFGSQQLMR  180
NMRSEWERTL IDNNCNSLSF PLTGGNVNAM LQSNKQELRD NNTIATTTTS LDVSEADTGM  240
GRKRRPDQEL SQNNQMGSYL VQSSTGSIPA SHSTIPATFW MMTNPSNNQV MSGAGESMWT  300
FPSVSNSNMY RGSMSSGGVH FVNLPTPMAL LPGQQLGSGI GSSGGTDSHL GMLAALNAYR  360
NISGAAVSES PACASHPHHG AGGDDGQDST SHHS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438669.10.0transcription factor TCP15
RefseqXP_006483179.10.0transcription factor TCP15
TrEMBLA0A067GTD40.0A0A067GTD4_CITSI; Uncharacterized protein
TrEMBLV4VH630.0V4VH63_9ROSI; Uncharacterized protein
STRINGXP_006483179.10.0(Citrus sinensis)
STRINGXP_006438669.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-48TCP family protein