PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g016095m

Common Name

CISIN_1g0160951mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 396aa MW: 45002.4 Da PI: 7.4953

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g016095m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.4e-50	26	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ ++ orange1.1g016095m 26 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAVGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIK 116 79*************************.89***********8777899********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s++++ +glkktLvfy+g+apkg +t+W+m+eyrl orange1.1g016095m 117 SENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 151 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-56	24	172	IPR003441	NAC domain
PROSITE profile	PS51005	55.318	25	172	IPR003441	NAC domain
Pfam	PF02365	4.4E-25	27	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MSMSMSISMS NNNDSKNDDH EHDVVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL 60 DLYRYDPWEL PALAAVGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIKSENS 120 RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPQHETERYQ KAEISLCRVH KRPGVEDHTS 180 LPRCLPTSKA SSSRTGSSRS TTRPDKILYY HHRRHGIERL QGFGGQSSHQ QMEMVTDEKM 240 STNTDQTDGS SSSCSDVAAV LGLSKQNVYR PNMASITTSL LGLPSSIMEE QAAASTLVPS 300 CTTTTLFPVA LSSSSSSSLI YSDAADEFHG LLTYPQASMN HHQQYYNIDH HLHLQELQPQ 360 SLNLLATPLP AAFSDRLWEW NPILEASREY NDPFK*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MSMSMSISMS NNNDSKNDDH EHDVVMPGFR FHPTEEELVE FYLRRKVEGK RFNVELITFL  60
DLYRYDPWEL PALAAVGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIKSENS  120
RSIGLKKTLV FYSGKAPKGI RTSWIMNEYR LPQHETERYQ KAEISLCRVH KRPGVEDHTS  180
LPRCLPTSKA SSSRTGSSRS TTRPDKILYY HHRRHGIERL QGFGGQSSHQ QMEMVTDEKM  240
STNTDQTDGS SSSCSDVAAV LGLSKQNVYR PNMASITTSL LGLPSSIMEE QAAASTLVPS  300
CTTTTLFPVA LSSSSSSSLI YSDAADEFHG LLTYPQASMN HHQQYYNIDH HLHLQELQPQ  360
SLNLLATPLP AAFSDRLWEW NPILEASREY NDPFK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	27	172	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	27	172	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	27	172	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	27	172	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	1e-54	27	172	19	165	NAC domain-containing protein 19
4dul_B	1e-54	27	172	19	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269\|PubMed:17653269}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431384.1	0.0	NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-112	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A067DP12	0.0	A0A067DP12_CITSI; Uncharacterized protein
STRING	XP_006431383.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-111	NAC domain containing protein 35

Link Out ? help Back to Top
Phytozome	orange1.1g016095m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]