PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g016012m
Common NameCISIN_1g014753mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 398aa    MW: 44218.8 Da    PI: 8.7678
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g016012mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32248301255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  orange1.1g016012m 248 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 301
                        9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15245301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28246301IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23248301IPR006447Myb domain, plants
PfamPF002492.7E-7249300IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTWSSRRG AAAEEEMDLG FWKRALDSRN SSSMAAANAK  60
PSSDISTGGG FELSLSNPAR VSSSSVLSES LSSNNNLNHH HQFHLLQNNT TTTTNCNGNN  120
IFHSFHHQQN HSQFPTHHHL HQNQHHHPVL YHQPPQQQGL SQELGFLRPI RGIPVYQNPH  180
HHHHHHQASH AFPFPHHQQQ PLDSPPPPSL VANNNTSTSS LNSFQSQQGL MRSRFMSRFP  240
AKRSMRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR  300
TVKTTDRAAA SSGQSDAFEN GSSGDTSEDI MFGIQHPRRP ETSSIQQQGR ASNGLWSNSS  360
SREAWLHGKT KDSAINLPSL EEVDPKCMSY EGISDGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-16249303357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-16249303357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-16249303357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-16249303357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-16249303458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952769.10.0probable transcription factor KAN2 isoform X3
SwissprotQ9C6163e-97KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A067EHE30.0A0A067EHE3_CITSI; Uncharacterized protein
STRINGXP_006471518.10.0(Citrus sinensis)
STRINGXP_006432742.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.14e-73G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]