PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015998m
Common NameCISIN_1g015998mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 398aa    MW: 44712.9 Da    PI: 6.751
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015998mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM141.16.7e-4471343128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        +GfrFhPt+ee+++++L++k+ g +++++++ + vd++k+ePwdLp+  ++ +e++ wyfF    +k++++k  nr+t+sg+Wk tgkd+ +
  orange1.1g015998m   7 VGFRFHPTEEEIISYFLERKMCGLDFPAHTIADVVDVCKYEPWDLPQrsRMPKEDRVWYFFNALVSKSPNSKLVNRQTNSGFWKPTGKDRVI 98 
                        7***************************6555555**********95357777999************************************ PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++g+++g kk Lvf++gra++g +t+Wvmhey+ 
  orange1.1g015998m  99 WDEQGKKIGFKKNLVFHTGRAKNGIRTNWVMHEYHS 134
                        **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100544.6595152IPR003441NAC domain
PfamPF023652.4E-227133IPR003441NAC domain
SuperFamilySSF1019412.88E-457152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEGHGVVGFR FHPTEEEIIS YFLERKMCGL DFPAHTIADV VDVCKYEPWD LPQRSRMPKE  60
DRVWYFFNAL VSKSPNSKLV NRQTNSGFWK PTGKDRVIWD EQGKKIGFKK NLVFHTGRAK  120
NGIRTNWVMH EYHSQNASSY SKEFVLLRLK KKSGDKPDAC NEPTPQPSAF DSGNGAIGNT  180
NPQINRDLPE ELQLLLSNPE LDYSHLAEVL SNIQPAQGTS INSKHGTSYS DGFNDELETS  240
GQEDAFVNSL WACQAECSGE RSMNTLRHDF NPTISLRGRS IGQSSDVDSK IYQQHGKVPG  300
TSNVFYEKTH AQMETVWALS ETSSSSEGYG IMDFDVSSVN SDTDLPGIVG HKSVVDELQH  360
TPKYHKYFEA RCSTQELKTQ RKVSNKAVSK VEVSMLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-34815220165NO APICAL MERISTEM PROTEIN
1ut4_B4e-34815220165NO APICAL MERISTEM PROTEIN
1ut7_A4e-34815220165NO APICAL MERISTEM PROTEIN
1ut7_B4e-34815220165NO APICAL MERISTEM PROTEIN
4dul_A4e-34815220165NAC domain-containing protein 19
4dul_B4e-34815220165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491404.10.0NAC domain-containing protein 86-like isoform X3
TrEMBLA0A067HF960.0A0A067HF96_CITSI; Uncharacterized protein
STRINGXP_006491403.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.18e-42NAC domain containing protein 52