PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015978m
Common NameCISIN_1g010802mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 398aa    MW: 44642.9 Da    PI: 8.1679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015978mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-3290147260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgynWrKYGqK++kg+e+prsYY+Ct+ +Cpvkkkvers+ + ++++i+Y++eHnhek
  orange1.1g015978m  90 DDGYNWRKYGQKPIKGNEYPRSYYKCTHVNCPVKKKVERSS-NAQITQIIYKNEHNHEK 147
                        8****************************************.***************85 PP
2WRKY106.31.6e-33287345159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+ +dpk+v++tYeg+Hnh+
  orange1.1g015978m 287 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNPGCNVRKHVERAPTDPKAVVTTYEGKHNHD 345
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-2983149IPR003657WRKY domain
PROSITE profilePS5081124.61684148IPR003657WRKY domain
SuperFamilySSF1182907.85E-2687148IPR003657WRKY domain
SMARTSM007742.7E-3689147IPR003657WRKY domain
PfamPF031062.7E-2590146IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-37272347IPR003657WRKY domain
SuperFamilySSF1182901.16E-29279347IPR003657WRKY domain
PROSITE profilePS5081138.17282347IPR003657WRKY domain
SMARTSM007741.2E-39287346IPR003657WRKY domain
PfamPF031063.4E-26288345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSHQQALATV TAQAFLAQSS MHKQAEYQPS LLSAPEESLT CNLSVTPDEP SQQQMPHSNS  60
APQSSMTEPL EVSHSDGKHM HPSAVDKPAD DGYNWRKYGQ KPIKGNEYPR SYYKCTHVNC  120
PVKKKVERSS NAQITQIIYK NEHNHEKPQL SKRAKDSSDA NENNNSQANP EPVLHGQTLY  180
ASSVLGSNQE SAQAAPIHLA DSSDSEELGD AENRKEGDDD EPNTKRRQVS KKYCIYSCRC  240
CPLFFQILSL FVFKTRNIAV ESEIVLSQKT VTEPKIIVQT RSEVDLLDDG YRWRKYGQKV  300
VKGNPHPRSY YKCTNPGCNV RKHVERAPTD PKAVVTTYEG KHNHDVPAAK NGSHSAPPRL  360
KPNKVVTEKH PLLKDMDFGH DDQRPVLLRL KEEQIIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-4290348878Probable WRKY transcription factor 4
2lex_A5e-4290348878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.11170.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276489e-78KT827648.1 Manihot esculenta WRKY transcription factor 73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482724.10.0probable WRKY transcription factor 4 isoform X1
RefseqXP_024955490.10.0probable WRKY transcription factor 4 isoform X2
TrEMBLA0A067G2X60.0A0A067G2X6_CITSI; Uncharacterized protein
TrEMBLA0A2H5PKB70.0A0A2H5PKB7_CITUN; Uncharacterized protein
STRINGXP_006482724.10.0(Citrus sinensis)
STRINGXP_006431265.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-103WRKY DNA-binding protein 3