PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g015924m

Common Name

CISIN_1g015827mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 399aa MW: 44987.8 Da PI: 6.8783

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g015924m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.5e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+++ orange1.1g015924m 14 MLPGFRFHPTDEELVGFYLKRKIQHRPLPI-ELIKQVDIYKYDPWDLPKLATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPI 104 579*************************.89***********8888899********************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl orange1.1g015924m 105 YSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 956667***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-58	13	172	IPR003441	NAC domain
PROSITE profile	PS51005	56.902	14	172	IPR003441	NAC domain
Pfam	PF02365	2.0E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQHRP LPIELIKQVD IYKYDPWDLP 60 KLATAGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPSLTYSAPQ KKLLDKTIPP NDAWAICRIF KKTNSMAQRA 180 LSHSWISPFP ETAASDILNQ GARCTQFSSE NVSCTTEIGS VIQLCGNNDL QQASTTSFSA 240 FDIPTYKPLY PPLYKPSLPP ASTGDLRNNF MFLPPEFSGP NECTNDAPSM LPNTAIFENI 300 IKGSENNIEV EGQQQQSRGF SISVPQDMQG NITMEEDETA GSRKNPNDNN NWGTIRSVGF 360 PFSLPLNMPD AWKSNLPWDS PPCTSEMSTT YSTNNCYT*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQHRP LPIELIKQVD IYKYDPWDLP  60
KLATAGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYRGRAAKGI KTDWMMHEFR LPSLTYSAPQ KKLLDKTIPP NDAWAICRIF KKTNSMAQRA  180
LSHSWISPFP ETAASDILNQ GARCTQFSSE NVSCTTEIGS VIQLCGNNDL QQASTTSFSA  240
FDIPTYKPLY PPLYKPSLPP ASTGDLRNNF MFLPPEFSGP NECTNDAPSM LPNTAIFENI  300
IKGSENNIEV EGQQQQSRGF SISVPQDMQG NITMEEDETA GSRKNPNDNN NWGTIRSVGF  360
PFSLPLNMPD AWKSNLPWDS PPCTSEMSTT YSTNNCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-52	5	175	7	168	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-52	5	175	7	168	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-52	5	175	7	168	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-52	5	175	7	168	NO APICAL MERISTEM PROTEIN
4dul_A	3e-52	5	175	7	168	NAC domain-containing protein 19
4dul_B	3e-52	5	175	7	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269\|PubMed:19081078}.
Uniprot	TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269\|PubMed:19081078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482563.1	0.0	protein FEZ isoform X2
Swissprot	Q9ZVH0	1e-104	FEZ_ARATH; Protein FEZ
TrEMBL	A0A067GAV8	0.0	A0A067GAV8_CITSI; Uncharacterized protein
STRING	XP_006482563.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-107	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g015924m

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]