PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015923m
Common NameCISIN_1g011077mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 399aa    MW: 44604.1 Da    PI: 9.6851
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015923mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36151072103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ed+++++++sws+++nsf+v++  ef++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++          eF+++ F +g+k+l
  orange1.1g015923m  15 FLSKIYDMVEDPSTNDIVSWSSSNNSFIVWKVAEFSRDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------YEFANEGFLRGQKHL 97 
                        9*****************************************************************99.........78************* PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i r+k +
  orange1.1g015923m  98 LKSISRRKPA 107
                        ******9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-38699IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.3E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSSSSAANGN SLPPFLSKIY DMVEDPSTND IVSWSSSNNS FIVWKVAEFS RDLLPKYFKH  60
SNFSSFVRQL NTYGFRKVDP DRYEFANEGF LRGQKHLLKS ISRRKPAQVH GQQQPKLQNS  120
SVGACVEVGK YGLEEEVEIL KRDKNVLMQE LVRLRQQQQA TDRQLHTVGQ RVQVMEQRQQ  180
QMMSFLAKAM HSPSFLSQLV QQQNDSNRHI SGSNKKRRLP RQDEENTVGA YDSSIPNGQI  240
VKFQPSMNEA AKAMLHQIMK MNSPSRLEPT MSNLSTFLID NIPSANALEN GHSSSQISGV  300
TLSEVPPNSG QSNMSTESRF HVPSSAISEI QCSPCVSDSV KVNPTQEKSK HNSGNDTVLP  360
NFPQLQGIAS ESTISIPDVN FVLKFGSNSF GWNNVHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27510419129Heat shock factor protein 1
5d5v_B3e-27510419129Heat shock factor protein 1
5d5v_D3e-27510419129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.171710.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443267.20.0heat stress transcription factor A-1e
RefseqXP_006478966.10.0heat stress transcription factor A-1e isoform X1
RefseqXP_006478968.10.0heat stress transcription factor A-1e isoform X1
RefseqXP_024043699.10.0heat stress transcription factor A-1e
SwissprotQ84T611e-145HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A067EBM10.0A0A067EBM1_CITSI; Uncharacterized protein
STRINGXP_006478966.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-124heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]