PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015848m
Common NameCISIN_1g013752mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 400aa    MW: 45453.7 Da    PI: 5.9234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015848mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14210261155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ +++Lr+l+P+a   + ++ + a+i   A++++k+L+
  orange1.1g015848m 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 261
                        79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.16E-13208265No hitNo description
SuperFamilySSF474593.4E-17209276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79209260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11210261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-14210272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11215266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEKLQGPINP YFLGDHLSVE CFEQEFINTG ALRFEFEEED EEGPQFTTTP SLEDKMPFLQ  60
MLQSVGTPSV FPFKEPNFQT LLRLQHLKKP WELVSPFMPE MEETQIQALE FESCVTQETL  120
DLHSPVKLET KDLQNPHSVT SCIEGLSSES NQEHIQVQPN SDSVINITHP PQQQIRAKQS  180
QFSKSPPITR EKRKRKRTKP IKNKEEVESQ RMTHIAVERN RRRQMNDHLN TLRSLMPPAY  240
VQRGDQASII GGAIDFVKEL EQLLQSLEAQ KRMRMGTTSA ATLEGCDSAT STTTTTTTTD  300
KAILSNVYSM SRPEIGNCEE KMKAESKLDG AEIEVIVIHN HVNLKIHCPR RPGQLLKAIV  360
ALEDLRLTFL HLNITSSETT VHYSFNLKVL VSIPFDEPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192199RKRKRTKP
2210221RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.59730.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444719.10.0transcription factor bHLH57
RefseqXP_006491385.10.0transcription factor bHLH57 isoform X2
TrEMBLA0A067HF630.0A0A067HF63_CITSI; Uncharacterized protein
STRINGXP_006491385.10.0(Citrus sinensis)
STRINGXP_006444719.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.13e-58bHLH family protein