PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015848m | ||||||||
Common Name | CISIN_1g013752mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 400aa MW: 45453.7 Da PI: 5.9234 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.4 | 3e-14 | 210 | 261 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ +++Lr+l+P+a + ++ + a+i A++++k+L+ orange1.1g015848m 210 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 261 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.16E-13 | 208 | 265 | No hit | No description |
SuperFamily | SSF47459 | 3.4E-17 | 209 | 276 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.79 | 209 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-11 | 210 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-14 | 210 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 215 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MEKLQGPINP YFLGDHLSVE CFEQEFINTG ALRFEFEEED EEGPQFTTTP SLEDKMPFLQ 60 MLQSVGTPSV FPFKEPNFQT LLRLQHLKKP WELVSPFMPE MEETQIQALE FESCVTQETL 120 DLHSPVKLET KDLQNPHSVT SCIEGLSSES NQEHIQVQPN SDSVINITHP PQQQIRAKQS 180 QFSKSPPITR EKRKRKRTKP IKNKEEVESQ RMTHIAVERN RRRQMNDHLN TLRSLMPPAY 240 VQRGDQASII GGAIDFVKEL EQLLQSLEAQ KRMRMGTTSA ATLEGCDSAT STTTTTTTTD 300 KAILSNVYSM SRPEIGNCEE KMKAESKLDG AEIEVIVIHN HVNLKIHCPR RPGQLLKAIV 360 ALEDLRLTFL HLNITSSETT VHYSFNLKVL VSIPFDEPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 199 | RKRKRTKP |
2 | 210 | 221 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5973 | 0.0 | callus |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006444719.1 | 0.0 | transcription factor bHLH57 | ||||
Refseq | XP_006491385.1 | 0.0 | transcription factor bHLH57 isoform X2 | ||||
TrEMBL | A0A067HF63 | 0.0 | A0A067HF63_CITSI; Uncharacterized protein | ||||
STRING | XP_006491385.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444719.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 3e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015848m |