PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g015827m

Common Name

CISIN_1g015827mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 400aa MW: 45116.9 Da PI: 6.5157

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g015827m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.5	2.3e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++ orange1.1g015827m 14 MLPGFRFHPTDEELVGFYLKRKIQHRPLPI-ELIKQVDIYKYDPWDLPkELATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRP 104 579*************************.89***********445566889******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +glkk+Lvfy+gra kg ktdW+mhe+rl orange1.1g015827m 105 IYSSdGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 956667**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-57	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.136	14	173	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQHRP LPIELIKQVD IYKYDPWDLP 60 KELATAGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG TKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSLTYSAP QKKLLDKTIP PNDAWAICRI FKKTNSMAQR 180 ALSHSWISPF PETAASDILN QGARCTQFSS ENVSCTTEIG SVIQLCGNND LQQASTTSFS 240 AFDIPTYKPL YPPLYKPSLP PASTGDLRNN FMFLPPEFSG PNECTNDAPS MLPNTAIFEN 300 IIKGSENNIE VEGQQQQSRG FSISVPQDMQ GNITMEEDET AGSRKNPNDN NNWGTIRSVG 360 FPFSLPLNMP DAWKSNLPWD SPPCTSEMST TYSTNNCYT*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQHRP LPIELIKQVD IYKYDPWDLP  60
KELATAGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG TKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSLTYSAP QKKLLDKTIP PNDAWAICRI FKKTNSMAQR  180
ALSHSWISPF PETAASDILN QGARCTQFSS ENVSCTTEIG SVIQLCGNND LQQASTTSFS  240
AFDIPTYKPL YPPLYKPSLP PASTGDLRNN FMFLPPEFSG PNECTNDAPS MLPNTAIFEN  300
IIKGSENNIE VEGQQQQSRG FSISVPQDMQ GNITMEEDET AGSRKNPNDN NNWGTIRSVG  360
FPFSLPLNMP DAWKSNLPWD SPPCTSEMST TYSTNNCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
3ulx_A	7e-51	1	176	1	171	Stress-induced transcription factor NAC1
4dul_A	5e-51	5	176	7	168	NAC domain-containing protein 19
4dul_B	5e-51	5	176	7	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269\|PubMed:19081078}.
Uniprot	TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269\|PubMed:19081078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024955448.1	0.0	protein FEZ isoform X1
Swissprot	Q9ZVH0	1e-103	FEZ_ARATH; Protein FEZ
TrEMBL	A0A067GAI9	0.0	A0A067GAI9_CITSI; Uncharacterized protein
STRING	XP_006482563.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-105	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g015827m

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]