PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015772m
Common NameCISIN_1g015772mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 401aa    MW: 43542.1 Da    PI: 5.8764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015772mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-17233287256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++k+q   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  orange1.1g015772m 233 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTK 287
                        778899***********************************************98 PP
2HD-ZIP_I/II1247.1e-40233323192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  orange1.1g015772m 233 RKKLRLSKQQSAFLEESFKEHTTLTPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 323
                        69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-18227290IPR009057Homeodomain-like
PROSITE profilePS5007116.957229289IPR001356Homeobox domain
SMARTSM003892.4E-15231293IPR001356Homeobox domain
CDDcd000864.51E-16233290No hitNo description
Gene3DG3DSA:1.10.10.609.1E-17233287IPR009057Homeodomain-like
PfamPF000467.6E-15233287IPR001356Homeobox domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
PfamPF021839.0E-11289323IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.8E-23289335IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MELSIGPTSS VREDGDDDNR KPTQEDEDHH HHEDRQTETA AAAAARLVDS AEIRRCSTPT  60
ATAETANIIQ QLDLLPNTPV VVPLPRNPTP SSILASFPAA NWTSAGSSEA AGSGQMARDA  120
NKLPMAIPAP LDLLVPHHND DEDPSSPEAE DGDGSHGAGA LSSSSLNTTS SAQMDFCIHS  180
SNHHHNDTST TGTGGTNNIR KSCGDIFRAS NDNNNEVVDG CSELEDENGC STRKKLRLSK  240
QQSAFLEESF KEHTTLTPKQ KLALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR  300
CCETLTEENR RLQKELQELR ALKSTAGNNP FYMQLPATTL TMCPSCERVA TTNINPPPLP  360
TTTTTPPKAT SNSTGSSPLS SRPMFVPFSH HKPTTTDGQI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231237TRKKLRL
2281289RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439024.20.0homeobox-leucine zipper protein HOX11
RefseqXP_006482812.10.0homeobox-leucine zipper protein HOX11-like
TrEMBLA0A067DWV50.0A0A067DWV5_CITSI; Uncharacterized protein
STRINGXP_006482812.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3346022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-64homeobox from Arabidopsis thaliana