PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015691m | ||||||||
Common Name | CISIN_1g014374mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 43902.2 Da PI: 5.9503 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.9e-10 | 244 | 292 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq orange1.1g015691m 244 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 292 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-17 | 239 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.03E-11 | 239 | 296 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-16 | 241 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 241 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-7 | 244 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 247 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MMPQKLPGMQ MNSVPMYKSV SGPDHFYGSG WEPIVSLNQG ESFGVSSMVS HNEFAPSYPV 60 ALENQGMSST SNLDQYSSDP SFVELVPKIP GFGSGNFSEM VSSFGLPENA QIASSGCPPN 120 YVPNKEGCYE RNSRNVSQSY EDHQICEEAA IGVATNGKTR KRAPESNSLL NTDKNVEVEL 180 QKDPSGDSSG ILKEQDEKKQ KIEQNTGANM RGKQAAKPTK DSSLSGEAPK EYIHMRAKRG 240 QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM 300 KLATVNPELN LDIERILSKD ILHARSGSAA TIGFSSGMNS SRPYPPGIFQ GTMPSIPGAN 360 PQFPPLPQSV LDHEFQSLFQ MGYDSTSAVD SLGPNGRLKS EL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024039086.1 | 0.0 | transcription factor bHLH74 isoform X1 | ||||
TrEMBL | A0A067H134 | 0.0 | A0A067H134_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067H1I2 | 0.0 | A0A067H1I2_CITSI; Uncharacterized protein | ||||
STRING | XP_006433666.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 8e-87 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015691m |