PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015691m
Common NameCISIN_1g014374mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 403aa    MW: 43902.2 Da    PI: 5.9503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015691mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10244292355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  orange1.1g015691m 244 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 292
                        58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-17239308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-11239296No hitNo description
Gene3DG3DSA:4.10.280.101.2E-16241309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7244292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMPQKLPGMQ MNSVPMYKSV SGPDHFYGSG WEPIVSLNQG ESFGVSSMVS HNEFAPSYPV  60
ALENQGMSST SNLDQYSSDP SFVELVPKIP GFGSGNFSEM VSSFGLPENA QIASSGCPPN  120
YVPNKEGCYE RNSRNVSQSY EDHQICEEAA IGVATNGKTR KRAPESNSLL NTDKNVEVEL  180
QKDPSGDSSG ILKEQDEKKQ KIEQNTGANM RGKQAAKPTK DSSLSGEAPK EYIHMRAKRG  240
QATNSHSLAE RVRREKISER MRLLQELVPG CNKITGKAVM LDEIINYVQS LQQQVEFLSM  300
KLATVNPELN LDIERILSKD ILHARSGSAA TIGFSSGMNS SRPYPPGIFQ GTMPSIPGAN  360
PQFPPLPQSV LDHEFQSLFQ MGYDSTSAVD SLGPNGRLKS EL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024039086.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A067H1340.0A0A067H134_CITSI; Uncharacterized protein
TrEMBLA0A067H1I20.0A0A067H1I2_CITSI; Uncharacterized protein
STRINGXP_006433666.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.18e-87bHLH family protein