PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015639m
Common NameCISIN_1g014090mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 404aa    MW: 44077.3 Da    PI: 6.9996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015639mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.86.1e-16313359455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  orange1.1g015639m 313 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 359
                        6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-20307374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-15312363No hitNo description
Gene3DG3DSA:4.10.280.108.4E-21313367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-13313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MRISIFLLNR AEEDVMELLW QNGPVVLHNQ NQRSLKKSQP SFPADQSAPR EIPSSHHHQQ  60
EQQDHLFMQE DEMASWLHYP LNDTNFDSDF CTDLLYPAPC ITSTTTTTAT ATATPPVRAT  120
RVRDSRPQLN TATTVASAPP LRPPIPPPPR RTENFGLFAR HMPREVASGP SNSKSVTIRE  180
STVVDSSDTP APGPDSRASE AMRSMEGASG VNNNNRCRNT SGAGAAATSS GGGGGSSGAR  240
DLTMCEMTVT SSPGGSSASA EPPAQKPAAE DRKRKGRETD DEYHSEDVEL ESADAKKQSR  300
GSTSAKRSRA AEVHNLSERR RRDRINEKMR ALQELIPRCN KSDKASMLDE AIEYLKSLQL  360
QVQMMSMGCG VVPMMFPGVQ QYMPNMGMGI GMGMGMGRAW IWE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443674.10.0transcription factor PIF1
RefseqXP_006480181.10.0transcription factor PIF1 isoform X2
TrEMBLA0A067FI810.0A0A067FI81_CITSI; Uncharacterized protein
STRINGXP_006443673.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.39e-62phytochrome interacting factor 3-like 5