PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015617m | ||||||||
Common Name | CISIN_1g014374mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 43773.9 Da PI: 5.7039 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.6 | 3.3e-06 | 268 | 295 | 3 | 30 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++i +++ L+el+P + orange1.1g015617m 268 NSHSLAERVRREKISERMRLLQELVPGC 295 58************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.02E-7 | 263 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.66E-5 | 263 | 306 | No hit | No description |
PROSITE profile | PS50888 | 10.702 | 265 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-7 | 269 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MGAGDNDDMG FQPRNESAMN CSSGMMPQKL PGMQMNSVPM YKSVSGPDHF YGSGWEPIVS 60 LNQGESFGVS SMVSHNEFAP SYPVALENQG MSSTSNLDQY SSDPSFVELV PKIPGFGSGN 120 FSEMVSSFGL PENAQIASSG CPPNYVPNKE GCYERNSRNV SQSYEDHQIC EEAAIGVATN 180 GKTRKRAPES NSLLNTDKNV EVELQKDPSG DSSGILKEQD EKKQKIEQNT GANMRGKQAA 240 KPTKDSSLSG EAPKEYIHMR AKRGQATNSH SLAERVRREK ISERMRLLQE LVPGCNKFLS 300 MKLATVNPEL NLDIERILSK DILHARSGSA ATIGFSSGMN SSRPYPPGIF QGTMPSIPGA 360 NPQFPPLPQS VLDHEFQSLF QMGYDSTSAV DSLGPNGRLK SEL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024039086.1 | 0.0 | transcription factor bHLH74 isoform X1 | ||||
TrEMBL | A0A067GRX9 | 0.0 | A0A067GRX9_CITSI; Uncharacterized protein | ||||
STRING | XP_006433666.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 6e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015617m |