PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015571m
Common NameCISIN_1g008967mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 405aa    MW: 44827.4 Da    PI: 8.4534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015571mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12227271554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  orange1.1g015571m 227 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 271
                        8899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.94E-10222275No hitNo description
PROSITE profilePS5088815.04222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16223291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13226288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9227271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MEMEMRSLFQ EDFKDQQSPA AAGGRPIQSS SSSSLRSLSM DSPSEYSSLL FNIPTSSHLS  60
ETLIDVVPNL QPLTTTTTAA STSTSISTTA GNTRTNTSLQ QAQQAMEAFA QLQNIQLPII  120
QETEQDAMTR AILAVLTSPT SSSSSSQQQQ QQQQQQEQPQ QHLAPPKASA FKNYNLVLAP  180
TSNIRAISAF RGQSILKRTI SYYRRLNIAR REYTAGPSRP TSTQLHHMIS ERKRREKLNE  240
SFHALRSLLP PGTKKDKASL LINTREYLSS LKAQVDELSR RNQILEAQVL PKAREAAAAA  300
SVNAEERVQV RVSPVAESTS EWRMVDIRVI VRGECPALDL VIRILEFLKG DDNLSLISVE  360
ANTQIAADST SFNHVILRLR IQGNEWDESA FEEAVRRVVG DLAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235ERKRRE
2231236RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475473.10.0putative transcription factor bHLH041 isoform X3
RefseqXP_024033941.10.0putative transcription factor bHLH041 isoform X2
TrEMBLA0A067DZG70.0A0A067DZG7_CITSI; Uncharacterized protein
STRINGXP_006451491.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-62bHLH family protein