PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015486m
Common NameCISIN_1g015330mg, LOC102609347
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 407aa    MW: 44880.5 Da    PI: 6.9091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015486mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08249296455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  orange1.1g015486m 249 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 296
                        8*************************9....888999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-15243314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-8243300No hitNo description
Gene3DG3DSA:4.10.280.101.3E-14245313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.519245295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6249296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-8251301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MEPTEHRSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH  60
HHHRRSPESN GSTAKLVTAK ADGHGLHHPH ATPHHFNPGA NLTFPSDISL IERAVRFSVF  120
AGINNSDNNH NDNNNNNHKV SSKIDKNNNN NNCSPETTGS VPSNSSGNLG KVKNEPAESD  180
SDNNNPNSPQ PLDIKTENQN QKSAKRKERE KKGKAATKKS KSGANDSSED AEKLPYVHVR  240
ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN HVQSLQRQVE  300
FLSMRLAAVN PRIDFNLDSL FVAESGSLID SSFPGMVMPV MWPELQAHGN RQQYQQQWHH  360
FDGHHQPLLG GAEESHNFVT PENSLLSYDS SANSATLHTN QLKMEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.88240.0flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490044.10.0transcription factor bHLH48
TrEMBLA0A067EQ820.0A0A067EQ82_CITSI; Uncharacterized protein
STRINGXP_006490044.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.24e-93bHLH family protein