PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015403m
Common NameCISIN_1g015403mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 408aa    MW: 44938.4 Da    PI: 8.3634
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015403mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.71.2e-32264319156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  orange1.1g015403m 264 KQRRCWSPELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 319
                        79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.339261321IPR017930Myb domain
SuperFamilySSF466894.98E-18261322IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-29262322IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-26264319IPR006447Myb domain, plants
PfamPF002499.7E-8266317IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGSVPPELSL DFRPTNFVPK TITDFLREVS LIGNVSEKLS KLDSFLKGLE DELRKIDAFK  60
RELPLCMLLL NDAILVLKEE SMQCARASKK VQPVLEEFIP LKNNNSEDDD EDARPIKKEK  120
DSSKDNKKNW MSSVQLWNTD YNHPTNDPIF DSKQNLNLKI KRNEEENPFQ ACKSRAGAVA  180
GAGAGATAFL PFKTCPVFPR KDDKEELPVH GLSLVTPGMK NPREDTGSTG SRTSCSKSVS  240
SSAPNVQSNL RTGPQPPQQQ TNRKQRRCWS PELHRRFVSA LQQLGGSQVA TPKQIRELMQ  300
VDGLTNDEVK SHLQKYRLHT RRTSPAVPAA PANQSTVVLG SLWMSQDQYG DSSKASSSQS  360
GSPQGPLQLT GNTGGTSTTG GDSMEDDEDA KSEGYSWKSH IHKSGKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-14264317154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166481e-118callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423074.10.0transcription factor HHO2
TrEMBLA0A067EE420.0A0A067EE42_CITSI; Uncharacterized protein
STRINGXP_006423074.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145351021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-55G2-like family protein