PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g015330m | ||||||||
Common Name | CISIN_1g015330mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 410aa MW: 45173.7 Da PI: 6.9093 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.5e-08 | 249 | 296 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq orange1.1g015330m 249 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 296 8*************************9....888999999999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-15 | 243 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-8 | 243 | 300 | No hit | No description |
PROSITE profile | PS50888 | 14.519 | 245 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 245 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.0E-6 | 249 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 251 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MEPTEHRSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH 60 HHHRRSPESN GSTAKLVTAK ADGHGLHHPH ATPHHFNPGA NLTFPSDISL IERAVRFSVF 120 AGINNSDNNH NDNNNNNHKV SSKIDKNNNN NNCSPETTGS VPSNSSGNLG KVKNEPAESD 180 SDNNNPNSPQ PLDIKTENQN QKSAKRKERE KKGKAATKKS KSGANDSSED AEKLPYVHVR 240 ARRGQATDSH SLAERARREK INARMKLLQE LVPGCNKISG TALVLDEIIN HVQSLQRQVE 300 FLSMRLAAVN PRIDFNLDSL FVAESGSLID SSFPGMVMPV MWPELQAHGN RQQYQQQWHH 360 FDGHHQPLLG GAEESHNFVT PENSLLSYDS SANSGREELI PHQKEGGKN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8824 | 0.0 | flower| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006490044.1 | 0.0 | transcription factor bHLH48 | ||||
TrEMBL | A0A067EPZ9 | 0.0 | A0A067EPZ9_CITSI; Uncharacterized protein | ||||
STRING | XP_006490044.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2576 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 2e-88 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g015330m |