PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015233m
Common NameCISIN_1g012387mg, LOC102631316
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 412aa    MW: 44764 Da    PI: 9.6308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015233mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.11e-15242287555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  orange1.1g015233m 242 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 287
                        9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-19235299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-13242287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-18242295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-16242291No hitNo description
SMARTSM003534.1E-18243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MHGLGPPRVP AKAAANNPSP TKNTCSGTLE SIVNQATSLP QAQRNGKPPL LDEFATAPCC  60
FHQQRPSMTT MDALVPCSNR RSEERTTQVM DPAPRVGGTR SIRVGSCSGP VPLPIPDSTK  120
DDDVLNGKRA RVARVPVAPE WSSRDQSFSG SATFGRESQR VSVTHDTYDM DMDMGVGFTG  180
TSMGSPENTS SAKQGNKATT ADDHDSVCHS RPLREAGDEE YKKKGNGKST ISTKRSRAAA  240
IHNQSERKRR DKINQRMKTL QKLVPNSSKT DKASMLDEVI EYLKQLQAQV QVMSRMNMPP  300
MMLPMAMQQQ LQMSMLSSMG MGMGMGMGMG VMDMNSMSRP NITSMPPLLH PFLPLASWDG  360
LGDRLQASPM TDPLSTFLAC QPQAASMDAY NRMAAMYQQM QQQPPASSSK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250ERKRRD
2246251RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37630.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445332.10.0transcription factor UNE10
RefseqXP_006490847.10.0transcription factor UNE10
SwissprotQ8GZ382e-89UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A067HCW30.0A0A067HCW3_CITSI; Uncharacterized protein
TrEMBLA0A067HD370.0A0A067HD37_CITSI; Uncharacterized protein
TrEMBLV4TY890.0V4TY89_9ROSI; Uncharacterized protein
STRINGXP_006490847.10.0(Citrus sinensis)
STRINGXP_006445332.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]