PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g015081m
Common NameCISIN_1g012118mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 414aa    MW: 46725.2 Da    PI: 7.6408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g015081mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.61e-35491921128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                        lp+G++F+Ptd+el+ ++L++kve+k+       ++++   i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++    
  orange1.1g015081m  49 LPAGVKFDPTDQELI-DHLEAKVEAKDmvkphplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 138
                        799************.99*********77776553333333766646**********.555666799******************7333455 PP

                NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  orange1.1g015081m 139 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192
                        5544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3844211IPR003441NAC domain
PROSITE profilePS5100532.81249211IPR003441NAC domain
PfamPF023652.3E-1650192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSGSKSNLGT NISSSDLIDA KLEEHQLCGS KQCPGCGHKL EAKPDWLGLP AGVKFDPTDQ  60
ELIDHLEAKV EAKDMVKPHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS  120
KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP  180
EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS EKSATTGEGS SDPNSRRDSG  240
SGSCSSKEMI PHRDHEVSGA QVAAAMSSYG AIDMQQLKSD HFSFVPFRKS FDEVGIGEAS  300
TAREAPAHGT CEDIRDHHQR PHHHLAHDHR QQQQQHQQQH QQQQQQQHHT HHQQIATTAF  360
HISRPSHPIS TIISPSPLHH TSIILDEDSY HVSRIMLQNE SFQVLKQNPV VFI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475352.10.0NAC domain-containing protein 75
RefseqXP_006475353.10.0NAC domain-containing protein 75
RefseqXP_024953323.10.0NAC domain-containing protein 75
SwissprotQ9M0F81e-165NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A067EPR20.0A0A067EPR2_CITSI; Uncharacterized protein
STRINGXP_006475352.10.0(Citrus sinensis)
STRINGXP_006451346.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-146NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]