PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014855m
Common NameCISIN_1g008017mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 418aa    MW: 45900.7 Da    PI: 9.5402
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014855mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001185105323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C++C+k F r  nL+ H r H
  orange1.1g014855m  85 CEICNKGFQRDQNLQLHRRGH 105
                        *******************88 PP
2zf-C2H212.20.00057159181123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H + +
  orange1.1g014855m 159 WKCEKCSKKYAVQSDWKAHSKIC 181
                        58*****************9876 PP
3zf-C2H211.10.0013189207523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCgk Fsr++++ +H   +
  orange1.1g014855m 189 DCGKLFSRRDSFITHRAFC 207
                        9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.14E-782105No hitNo description
PROSITE profilePS5015710.82483105IPR007087Zinc finger, C2H2
SMARTSM003550.1183105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM0035582124154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4147180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.14E-7154179No hitNo description
SMARTSM00355140159179IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MKMMKGLLVE ENMSNLTSAS GEVTASSGSR VETGTNFYAQ HSFSSTNEAT PPSKKKRSLP  60
GNPDPDAEVI ALSPKSLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTNKVER  120
KKVYVCPEPT CVHHDPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI  180
CGTREYKCDC GKLFSRRDSF ITHRAFCDVL AEESARTITV NPLFSPSQQQ PNSSATHMLN  240
FPSHHHHQLQ SQGLQALQLQ AVKIEDNNQQ HHIPPWLACP SSIDLSSQLF SGNIFSRSLL  300
HNENQSASPS PNPNSTSFAP FEPPGTTGSQ HTSATALLQK AAQMGATMST QPSALPAPVL  360
RVPVPHQTHH MPAGSASTAG AAGSSSGLGL SSREDLAICC KYYNYYNRPW DSSISSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34155216364Zinc finger protein JACKDAW
5b3h_F1e-34155216364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109121KLKQRTNKVERKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.18860.0flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953394.10.0protein indeterminate-domain 7 isoform X3
SwissprotQ8H1F51e-122IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A067GN790.0A0A067GN79_CITSI; Uncharacterized protein
STRINGXP_006475907.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-107indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]