PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g014830m | ||||||||
Common Name | CISIN_1g014872mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 418aa MW: 47973.4 Da PI: 8.1156 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 157 | 180 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H orange1.1g014830m 157 YICGVCGRKCKTNLDLKKHFKQlH 180 89*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 3.7E-5 | 75 | 147 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.575 | 157 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 180 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 6.60E-8 | 171 | 311 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 3.7E-5 | 242 | 309 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MKWLCSSLDA RSLKPLVRYN KSDFHFSQSL VLEKLPTHFN TKLALKPSKC CIKTSSASAS 60 IDIDMVRNKQ GIYTQKQNNK VVVLWDLDNK PPRGPPYDAA MSLRRVAERF GEVTDISAYA 120 NRHAFIHLPQ WVIQERRERK QFDILERRGV AVPNDPYICG VCGRKCKTNL DLKKHFKQLH 180 ERERQKKLNR MKSLKGKKRQ KYKERYISGN DKYNEAARSL LKPKVGYGLG SELRRAGVFV 240 KTVRDKPQAA DWALKRQMQH SMSSGVDWMF LVSDDNDFKE MLRKARDANL GTVVVGDSNR 300 GLGQHADLWV PWIEVENGEL TERDLVPRTR RTTTEDFERD GLGLFSLTEF DGVVGFEDET 360 DLDSVVNELV AERTEFGGVR ISMFSEGEEE EDYWVTEEAG GDYLLEGGEL EEQDSYF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434724.1 | 0.0 | uncharacterized protein LOC18041158 | ||||
Refseq | XP_024040192.1 | 0.0 | uncharacterized protein LOC18041158 | ||||
TrEMBL | A0A067GWV6 | 0.0 | A0A067GWV6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4V788 | 0.0 | V4V788_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434724.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12584 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-165 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g014830m |