PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014660m
Common NameCISIN_1g014660mg, LOC102607505
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 422aa    MW: 44655.7 Da    PI: 9.1087
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014660mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.65e-22278340163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkrerrkq+NRe+ArrsR+RK+ae eeL +kv++L  eN +Lk+e+++l+++++kl++e+
  orange1.1g014660m 278 ERELKRERRKQSNRESARRSRLRKQAEAEELSRKVDSLIDENASLKSEINQLSENSEKLRQEN 340
                        89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.3E-34194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.9E-24127259No hitNo description
Gene3DG3DSA:1.20.5.1709.2E-18272338No hitNo description
SMARTSM003383.2E-20278342IPR004827Basic-leucine zipper domain
PfamPF001705.1E-20278340IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.622280343IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11281338No hitNo description
CDDcd147022.45E-20283331No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGNNEDGKSF KSEKPSSPPP SDQGNIHMYT DWAAMQAYYG PRVAIPPYYN SPIASGHAPQ  60
PYMWGPAQPM MPPYGAPYAA IYSTGGVYAH PAVPLGSHAH NHGVPTSPAA VTPLNTEAPT  120
KSSGNADRGL AKKLKGLDGL AMSIGNASAE SAEGGAEQRP SQSEADGSTD GSDGNTVRAG  180
QSRKKRSREG TPIAGGDGKT DIQSTPVPVG VNATPDKVLA TAVAPTSVSG KPVGPVLSPG  240
MPTKLELRNA PGMNVKASPT SVPQPCAVLP PETWIQNERE LKRERRKQSN RESARRSRLR  300
KQAEAEELSR KVDSLIDENA SLKSEINQLS ENSEKLRQEN AALLEKLKSA QLGNKQEIVL  360
NEDKRVTPVS TENLLSRVNN SGTVDRNMEE GGHLFEKNSN SGAKLHQLLD ASPRTDAVAA  420
G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294300RRSRLRK
2294301RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116380.0callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920462e-72KR492046.1 UNVERIFIED: Citrus sinensis clone 215-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444899.10.0common plant regulatory factor 1 isoform X1
RefseqXP_006491223.10.0common plant regulatory factor 1 isoform X1
RefseqXP_006491224.10.0common plant regulatory factor 1 isoform X1
SwissprotQ990891e-142CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A067H6420.0A0A067H642_CITSI; Uncharacterized protein
TrEMBLV4U7K80.0V4U7K8_9ROSI; Uncharacterized protein
STRINGXP_006491223.10.0(Citrus sinensis)
STRINGXP_006444896.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-97G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]