PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014533m
Common NameCISIN_1g013045mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 424aa    MW: 47515.3 Da    PI: 6.1976
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014533mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-073734052254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +yp++e++++L +++gL+ +q+ +WF N+R +
  orange1.1g014533m 373 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 405
                        69*****************************87 PP

2ELK28.82.8e-10326347122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+++++++++E++
  orange1.1g014533m 326 ELKHELKQGYKEKIVDIREEIL 347
                        9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-20174218IPR005540KNOX1
PfamPF037903.5E-18176217IPR005540KNOX1
SMARTSM012563.6E-10229269IPR005541KNOX2
PROSITE profilePS512139.969326346IPR005539ELK domain
PfamPF037899.8E-7326347IPR005539ELK domain
SMARTSM011886.1E-4326347IPR005539ELK domain
PROSITE profilePS5007111.758346409IPR001356Homeobox domain
SuperFamilySSF466895.13E-16348411IPR009057Homeodomain-like
SMARTSM003891.0E-10348413IPR001356Homeobox domain
CDDcd000861.41E-11349410No hitNo description
Gene3DG3DSA:1.10.10.608.5E-25353410IPR009057Homeodomain-like
PfamPF059201.2E-17366405IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAFHHNHLSQ DLPLHHFTDQ QQQQQQQPPS PPQQQHHQHQ QSIETTAPNW LNSALLRSQQ  60
AQQQAAHFSD TNFLNLRTTA NNNNSNNNNT ASDSDASQTP NQWLSRTSSS LLHRNHSDVI  120
DDVTPANDSI IAAVESADLK NANSENMNNA STNNKSEGVV VESGADGVVN WQNARYKAEI  180
LSHPLYEQLL SAHVACLRIA TPVDQLPRID AQLAQSQHVV SKYSALGAGQ GLVTDDKELD  240
QFMQHVRVHA MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDDEDQVDS DANLFDGSLE  300
GPDTMGFGPL IPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT  360
SVLKSWWQSH SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSTVLKSK  420
RKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12349414873Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402422RKRNWHSNPSTSTVLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.21660.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3888761e-176FJ388876.1 Juglans nigra KNAT3-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450342.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_006483429.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A067DUV50.0A0A067DUV5_CITSI; Uncharacterized protein
STRINGXP_006483429.10.0(Citrus sinensis)
STRINGXP_006450342.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]