PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014506m
Common NameCISIN_1g008967mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 424aa    MW: 46663.5 Da    PI: 7.6357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014506mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.1e-12246290554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  orange1.1g014506m 246 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 290
                        8899********************97.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.04241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-10241294No hitNo description
SuperFamilySSF474591.96E-16242310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13245307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9246290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MACKSGEIEL GLCGGSQGNM EMEMRSLFQE DFKDQQSPAA AGGRPIQSSS SSSLRSLSMD  60
SPSEYSSLLF NIPTSSHLSE TLIDVVPNLQ PLTTTTTAAS TSTSISTTAG NTRTNTSLQQ  120
AQQAMEAFAQ LQNIQLPIIQ ETEQDAMTRA ILAVLTSPTS SSSSSQQQQQ QQQQQEQPQQ  180
HLAPPKASAF KNYNLVLAPT SNIRAISAFR GQSILKRTIS YYRRLNIARR EYTAGPSRPT  240
STQLHHMISE RKRREKLNES FHALRSLLPP GTKKDKASLL INTREYLSSL KAQVDELSRR  300
NQILEAQVLP KAREAAAAAS VNAEERVQVR VSPVAESTSE WRMVDIRVIV RGECPALDLV  360
IRILEFLKGD DNLSLISVEA NTQIAADSTS FNHVILRLRI QGNEWDESAF EEAVRRVVGD  420
LAH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254ERKRRE
2250255RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033942.10.0putative transcription factor bHLH041 isoform X3
TrEMBLA0A067EAH10.0A0A067EAH1_CITSI; Uncharacterized protein
STRINGXP_006451491.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-63bHLH family protein