PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g014506m | ||||||||
Common Name | CISIN_1g008967mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 424aa MW: 46663.5 Da PI: 7.6357 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 7.1e-12 | 246 | 290 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+llP+ +K +Ka+ L + eY++sL orange1.1g014506m 246 HMISERKRREKLNESFHALRSLLPPG-----TKKDKASLLINTREYLSSL 290 8899********************97.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.04 | 241 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-10 | 241 | 294 | No hit | No description |
SuperFamily | SSF47459 | 1.96E-16 | 242 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 245 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-9 | 246 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-13 | 247 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 424 aa Download sequence Send to blast |
MACKSGEIEL GLCGGSQGNM EMEMRSLFQE DFKDQQSPAA AGGRPIQSSS SSSLRSLSMD 60 SPSEYSSLLF NIPTSSHLSE TLIDVVPNLQ PLTTTTTAAS TSTSISTTAG NTRTNTSLQQ 120 AQQAMEAFAQ LQNIQLPIIQ ETEQDAMTRA ILAVLTSPTS SSSSSQQQQQ QQQQQEQPQQ 180 HLAPPKASAF KNYNLVLAPT SNIRAISAFR GQSILKRTIS YYRRLNIARR EYTAGPSRPT 240 STQLHHMISE RKRREKLNES FHALRSLLPP GTKKDKASLL INTREYLSSL KAQVDELSRR 300 NQILEAQVLP KAREAAAAAS VNAEERVQVR VSPVAESTSE WRMVDIRVIV RGECPALDLV 360 IRILEFLKGD DNLSLISVEA NTQIAADSTS FNHVILRLRI QGNEWDESAF EEAVRRVVGD 420 LAH* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 249 | 254 | ERKRRE |
2 | 250 | 255 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024033942.1 | 0.0 | putative transcription factor bHLH041 isoform X3 | ||||
TrEMBL | A0A067EAH1 | 0.0 | A0A067EAH1_CITSI; Uncharacterized protein | ||||
STRING | XP_006451491.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56960.1 | 6e-63 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g014506m |