PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014374m
Common NameCISIN_1g014374mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 427aa    MW: 46375.9 Da    PI: 5.3203
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014374mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-10268316355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  orange1.1g014374m 268 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 316
                        58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17263332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-11263320No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16265333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485265315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7268316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGAGDNDDMG FQPRNESAMN CSSGMMPQKL PGMQMNSVPM YKSVSGPDHF YGSGWEPIVS  60
LNQGESFGVS SMVSHNEFAP SYPVALENQG MSSTSNLDQY SSDPSFVELV PKIPGFGSGN  120
FSEMVSSFGL PENAQIASSG CPPNYVPNKE GCYERNSRNV SQSYEDHQIC EEAAIGVATN  180
GKTRKRAPES NSLLNTDKNV EVELQKDPSG DSSGILKEQD EKKQKIEQNT GANMRGKQAA  240
KPTKDSSLSG EAPKEYIHMR AKRGQATNSH SLAERVRREK ISERMRLLQE LVPGCNKITG  300
KAVMLDEIIN YVQSLQQQVE FLSMKLATVN PELNLDIERI LSKDILHARS GSAATIGFSS  360
GMNSSRPYPP GIFQGTMPSI PGANPQFPPL PQSVLDHEFQ SLFQMGYDST SAVDSLGPNG  420
RLKSEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024039086.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A067H1I20.0A0A067H1I2_CITSI; Uncharacterized protein
STRINGXP_006433666.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-86bHLH family protein