PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g014310m | ||||||||
Common Name | CISIN_1g014310mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 428aa MW: 47557.9 Da PI: 5.1277 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.2 | 8e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkk.vegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+P+d+e++++ L+k +eg + + +e+i++vd i++++P++Lp vk++ + +fF ++ k+y+tg+rk+r+++ orange1.1g014310m 58 LPRGVKFDPSDQEIIWHLLAKAgLEGLNphpfI--DEFIPTVDqdggICYTHPQNLP-GVKQDGSAAHFFYRAIKAYSTGTRKRRKINgddf 146 799************998888745554464322..345777765677**********.777888999******************8655565 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tg++k+v+ +g ++g+kk++v+y r k+ekt+Wvmh+y+l orange1.1g014310m 147 gEVRWHKTGRTKPVML-DGVQKGCKKIMVLYmsMVRGGKAEKTNWVMHQYHL 197 5889************.99************6546899999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-38 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.705 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-13 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MAGPSWLVDS NRIATKIKSA SGTGDPERVK WKSNPTKACP NCHHVIDNSD VAHEWPGLPR 60 GVKFDPSDQE IIWHLLAKAG LEGLNPHPFI DEFIPTVDQD GGICYTHPQN LPGVKQDGSA 120 AHFFYRAIKA YSTGTRKRRK INGDDFGEVR WHKTGRTKPV MLDGVQKGCK KIMVLYMSMV 180 RGGKAEKTNW VMHQYHLGTE EDEKDRDYVI SKISYQQQQA KYGDKIEQDI LESTGAIIPK 240 VDPVTPKLVT PDPPRTERHP DFGPRQESPT TDAFDQQSEI RHVEEVQPLC ENPGSNDKIE 300 AENHANVMVG NNDNGSQAGD DSKWWDSESQ NILDTQQLAE ALTLCEEFLN SQSDGNANDG 360 TSKGKPGLSD YARLGSEHLK KDLEECQMLV HDPANIELDT PPEFGLSQLE FNSQDSFIPF 420 GGSKAIN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2843 | 0.0 | callus| flower| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437738.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 0.0 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A067FRV2 | 0.0 | A0A067FRV2_CITSI; Uncharacterized protein | ||||
STRING | XP_006437738.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9707 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 0.0 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g014310m |