PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014309m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 428aa    MW: 47869.8 Da    PI: 5.5785
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014309mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-32188242155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k r+rWtpeLHe+Fveav++LGG e+AtPk +l+lm+v+ Lt++hvkSHLQkYR+
  orange1.1g014309m 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 242
                        68****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.21185245IPR017930Myb domain
SuperFamilySSF466895.38E-18187243IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-31187245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24188242IPR006447Myb domain, plants
PfamPF002496.1E-11190241IPR001005SANT/Myb domain
PfamPF143791.2E-21273319IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSNPQQISAS SSRFPDNIHF SSVSPHERYS QNSPFISQSL RDEARLRSTH FSPSEGQPTP  60
LINHPEENKD NSWCIDPLQD FLDFPENDPG QTGLLESNTG DIASDDRAKR IEWWADQLIS  120
VEDGPEPNWS EVLADANVTD ARQKVLKPST DIPTQHPQVH PQGQQHQPVS NEEFHAVANP  180
LSMTPANKSR MRWTPELHEA FVEAVNRLGG GERATPKGVL KLMNVENLTI YHVKSHLQKY  240
RTARHRPESS EGTSEKKSNP TEDMKSLDTK TTMSITEALR LQMEVQKRLH EQLEIQRNLQ  300
LRIEEQGRHL QMMFEQRKQM ENEKSKASSS SLENPSAPLF ESKQHSSPNE TSMATELDVA  360
KTGADTSHVI SAPEDSSASL NQKQKAPETK TGEEVDPDDD ESGHKPVKRA RSEATAFSPK  420
SALGNTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-29188246260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.74510.0callus| fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024952052.10.0protein PHR1-LIKE 1 isoform X2
SwissprotQ8GUN53e-94PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLV4S4Z50.0V4S4Z5_9ROSI; Uncharacterized protein
STRINGXP_006470918.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.32e-94G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]