PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g014309m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 47869.8 Da PI: 5.5785 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.6 | 1.2e-32 | 188 | 242 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe+Fveav++LGG e+AtPk +l+lm+v+ Lt++hvkSHLQkYR+ orange1.1g014309m 188 KSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRT 242 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.21 | 185 | 245 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-18 | 187 | 243 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-31 | 187 | 245 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 188 | 242 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-11 | 190 | 241 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-21 | 273 | 319 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MSNPQQISAS SSRFPDNIHF SSVSPHERYS QNSPFISQSL RDEARLRSTH FSPSEGQPTP 60 LINHPEENKD NSWCIDPLQD FLDFPENDPG QTGLLESNTG DIASDDRAKR IEWWADQLIS 120 VEDGPEPNWS EVLADANVTD ARQKVLKPST DIPTQHPQVH PQGQQHQPVS NEEFHAVANP 180 LSMTPANKSR MRWTPELHEA FVEAVNRLGG GERATPKGVL KLMNVENLTI YHVKSHLQKY 240 RTARHRPESS EGTSEKKSNP TEDMKSLDTK TTMSITEALR LQMEVQKRLH EQLEIQRNLQ 300 LRIEEQGRHL QMMFEQRKQM ENEKSKASSS SLENPSAPLF ESKQHSSPNE TSMATELDVA 360 KTGADTSHVI SAPEDSSASL NQKQKAPETK TGEEVDPDDD ESGHKPVKRA RSEATAFSPK 420 SALGNTL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-29 | 188 | 246 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7451 | 0.0 | callus| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024952052.1 | 0.0 | protein PHR1-LIKE 1 isoform X2 | ||||
Swissprot | Q8GUN5 | 3e-94 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | V4S4Z5 | 0.0 | V4S4Z5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470918.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 2e-94 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g014309m |
Publications ? help Back to Top | |||
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