PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g014184m | ||||||||
Common Name | CISIN_1g014184mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 430aa MW: 47676.5 Da PI: 8.0425 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H orange1.1g014184m 60 YVCEICNQGFQRDQNLQMHRRRH 82 9*********************9 PP | |||||||
2 | zf-C2H2 | 16 | 3.4e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ orange1.1g014184m 137 WVCDKCNKGYAVQSDYKAHLKTC 159 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.67E-5 | 59 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 59 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 101 | 131 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 128 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.67E-5 | 132 | 157 | No hit | No description |
SMART | SM00355 | 49 | 137 | 164 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 430 aa Download sequence Send to blast |
MLENNINIID PSSSSDPFSS SENGALAIHN KRKRKPAGTP DPDAEVVSLS PKTLLESDRY 60 VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK RETQEVRKRV FVCPEPSCLH HDPCHALGDL 120 VGIKKHFRRK HSNHKQWVCD KCNKGYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE 180 HQDACTMRRV QQPESQAMHA QPACSSRTAS STSPSSDANF SIPPALPGLP LQKPGEPVFL 240 YSSRSNASIS DHQQEHNLEL QLLPSSSNSN ATRTSYENYA THLKLSIGSS DSGGENSESN 300 KLISSDATAC EPSLEAKKLK EFANEQLKLA MAEKAYAEEA RQQAKRQIEM AELEFANAKR 360 IRQQAQSELE KALALKEQAT KKISATIMQV TCQACKHQFQ ASTSMAPPCD ETSLAMSYMS 420 SATTEGEGE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-17 | 135 | 185 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 5e-17 | 135 | 185 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression levels gradually decrease with aging in both the shoot and root vasculature. {ECO:0000269|PubMed:16813575}. | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM). {ECO:0000269|PubMed:16813575}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006448065.1 | 0.0 | protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-163 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A067DC49 | 0.0 | A0A067DC49_CITSI; Uncharacterized protein | ||||
STRING | XP_006448065.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM693 | 28 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-151 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g014184m |
Publications ? help Back to Top | |||
---|---|---|---|
|