PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g014090m
Common NameCISIN_1g014090mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 432aa    MW: 47353.8 Da    PI: 6.2962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g014090mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12333387455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P +              +Ka++L +A+eY+ksLq
  orange1.1g014090m 333 VHNLSERRRRDRINEKMRALQELIPRCNkflfffD---FQSDKASMLDEAIEYLKSLQ 387
                        6*************************866885542...45689**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-19326395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-19327402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888329386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-13332391No hitNo description
PfamPF000101.2E-9333387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15335392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MNHCVPDFEF DDDHSIPTSS VLNRPRKSAM AEEDVMELLW QNGPVVLHNQ NQRSLKKSQP  60
SFPADQSAPR EIPSSHHHQQ EQQDHLFMQE DEMASWLHYP LNDTNFDSDF CTDLLYPAPC  120
ITSTTTTTAT ATATPPVRAT RVRDSRPQLN TATTVASAPP LRPPIPPPPR RTENFGLFAR  180
HMPREVASGP SNSKSVTIRE STVVDSSDTP APGPDSRASE AMRSMEGASG VNNNNRCRNT  240
SGAGAAATSS GGGGGSSGAR DLTMCEMTVT SSPGGSSASA EPPAQKPAAE DRKRKGRETD  300
DEYHSEDVEL ESADAKKQSR GSTSAKRSRA AEVHNLSERR RRDRINEKMR ALQELIPRCN  360
KFLFFFDFQS DKASMLDEAI EYLKSLQLQV QMMSMGCGVV PMMFPGVQQY MPNMGMGIGM  420
GMGMGRAWIW E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443674.10.0transcription factor PIF1
RefseqXP_006480181.10.0transcription factor PIF1 isoform X2
TrEMBLA0A067FRN10.0A0A067FRN1_CITSI; Uncharacterized protein
STRINGXP_006443673.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-66phytochrome interacting factor 3-like 5