PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013752m
Common NameCISIN_1g013752mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 438aa    MW: 49594.7 Da    PI: 6.2821
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013752mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14232283155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ +++Lr+l+P+a   + ++ + a+i   A++++k+L+
  orange1.1g013752m 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 283
                        79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.09E-13230287No hitNo description
SuperFamilySSF474593.93E-17231298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.79231282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11232283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-14232294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11237288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MIVLSLAFKG RCVKPIVLAV SLFICRWVFV FLQFLGDHLS VECFEQEFIN TGALRFEFEE  60
EDEEGPQFTT TPSLEDKMPF LQMLQSVGTP SVFPFKEPNF QTLLRLQHLK KPWELVSPFM  120
PEMEETQIQA LEFESCVTQE TLDLHSPVKL ETKDLQNPHS VTSCIEGLSS ESNQEHIQVQ  180
PNSDSVINIT HPPQQQIRAK QSQFSKSPPI TREKRKRKRT KPIKNKEEVE SQRMTHIAVE  240
RNRRRQMNDH LNTLRSLMPP AYVQRGDQAS IIGGAIDFVK ELEQLLQSLE AQKRMRMGTT  300
SAATLEGCDS ATSTTTTTTT TDKAILSNVY SMSRPEIGNC EEKMKAESKL DGAEIEVIVI  360
HNHVNLKIHC PRRPGQLLKA IVALEDLRLT FLHLNITSSE TTVHYSFNLK IEEDCKLGSA  420
EEIAAAVHQI FSYINGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214221RKRKRTKP
2232243RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.59730.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948228.10.0transcription factor bHLH57 isoform X1
TrEMBLA0A067H3Q20.0A0A067H3Q2_CITSI; Uncharacterized protein
STRINGXP_006491385.10.0(Citrus sinensis)
STRINGXP_006444719.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-69bHLH family protein