PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g013752m | ||||||||
Common Name | CISIN_1g013752mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 49594.7 Da PI: 6.2821 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.4e-14 | 232 | 283 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ +++Lr+l+P+a + ++ + a+i A++++k+L+ orange1.1g013752m 232 QRMTHIAVERNRRRQMNDHLNTLRSLMPPA---YVQRGDQASIIGGAIDFVKELE 283 79****************************...*******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.09E-13 | 230 | 287 | No hit | No description |
SuperFamily | SSF47459 | 3.93E-17 | 231 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.79 | 231 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 232 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.9E-14 | 232 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-11 | 237 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MIVLSLAFKG RCVKPIVLAV SLFICRWVFV FLQFLGDHLS VECFEQEFIN TGALRFEFEE 60 EDEEGPQFTT TPSLEDKMPF LQMLQSVGTP SVFPFKEPNF QTLLRLQHLK KPWELVSPFM 120 PEMEETQIQA LEFESCVTQE TLDLHSPVKL ETKDLQNPHS VTSCIEGLSS ESNQEHIQVQ 180 PNSDSVINIT HPPQQQIRAK QSQFSKSPPI TREKRKRKRT KPIKNKEEVE SQRMTHIAVE 240 RNRRRQMNDH LNTLRSLMPP AYVQRGDQAS IIGGAIDFVK ELEQLLQSLE AQKRMRMGTT 300 SAATLEGCDS ATSTTTTTTT TDKAILSNVY SMSRPEIGNC EEKMKAESKL DGAEIEVIVI 360 HNHVNLKIHC PRRPGQLLKA IVALEDLRLT FLHLNITSSE TTVHYSFNLK IEEDCKLGSA 420 EEIAAAVHQI FSYINGS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 214 | 221 | RKRKRTKP |
2 | 232 | 243 | RMTHIAVERNRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5973 | 0.0 | callus |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024948228.1 | 0.0 | transcription factor bHLH57 isoform X1 | ||||
TrEMBL | A0A067H3Q2 | 0.0 | A0A067H3Q2_CITSI; Uncharacterized protein | ||||
STRING | XP_006491385.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006444719.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3119 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g013752m |