PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013688m
Common NameCISIN_1g012387mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 439aa    MW: 47858.3 Da    PI: 8.153
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013688mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH491.1e-15295340555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  orange1.1g013688m 295 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 340
                        9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-19288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-13295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18295348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.54E-17295344No hitNo description
SMARTSM003534.1E-18296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MSQCVPSWDL DENYPNNCRA SLRSRSNSTA PDVPMLELDY EVAELTWENG QLAMHGLGPP  60
RVPAKAAANN PSPTKNTCSG TLESIVNQAT SLPQAQRNGK PPLLDEFATA PCCFHQQRPS  120
MTTMDALVPC SNRRSEERTT QVMDPAPRVG GTRSIRVGSC SGPVPLPIPD STKDDDVLNG  180
KRARVARVPV APEWSSRDQS FSGSATFGRE SQRVSVTHDT YDMDMDMGVG FTGTSMGSPE  240
NTSSAKQGNK ATTADDHDSV CHSRPLREAG DEEYKKKGNG KSTISTKRSR AAAIHNQSER  300
KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ AQVQVMSRMN MPPMMLPMAM  360
QQQLQMSMLS SMGMGMGMGM GMGVMDMNSM SRPNITSMPP LLHPFLPLAS WDGLGDRLQA  420
SPMTDPLSTF LACQPQVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303ERKRRD
2299304RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37630.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445332.10.0transcription factor UNE10
RefseqXP_006490847.10.0transcription factor UNE10
SwissprotQ8GZ381e-101UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A067HCV80.0A0A067HCV8_CITSI; Uncharacterized protein
STRINGXP_006490847.10.0(Citrus sinensis)
STRINGXP_006445332.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-94bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]