PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g013523m | ||||||||
Common Name | CISIN_1g013552mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 442aa MW: 49001.3 Da PI: 8.4814 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl orange1.1g013523m 46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.014 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-31 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.14E-17 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-23 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.3E-10 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-23 | 187 | 233 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MYHHHQNQGK SMHSSSRMPI PTERHLFLQG GSGPGDSGLV LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANI GNNKIGKKTI 120 SQKSANYQKD QNCNTYLACK AHTGIGGMKF KSSGVGPVTV PGERMPEANA THMNNLSIGP 180 QPNKSLHISE TIQMQIEVQR RLHEQLEVQR HLQLRIEAQG KYLQAVLEKA QETLGRQNLG 240 TAGLEAAKVQ LSELVSKVST QCLNSTFSDL KELQGFCPQQ PQANQPTDCS MDSCLTSCEG 300 SQKDQEIHNG GVRLRPYHGT PTLEPKEIVE EPMLQQTELK WRKDLKESKF LSSIGKDRGP 360 GELSIGSGSF PAGRFKASNE DEHFQDQTNK KPEGAKLENE NLLPEYRLPC FSTKLDLNAH 420 DHENDVASGC KQFDLNGFSW N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443380.1 | 0.0 | myb-related protein 2 | ||||
Refseq | XP_006479082.1 | 0.0 | myb-related protein 2 | ||||
Refseq | XP_006479083.1 | 0.0 | myb-related protein 2 | ||||
Refseq | XP_024044798.1 | 0.0 | myb-related protein 2 | ||||
Swissprot | Q9SQQ9 | 1e-155 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A067EVY1 | 0.0 | A0A067EVY1_CITSI; Uncharacterized protein | ||||
TrEMBL | V4VTW0 | 0.0 | V4VTW0_9ROSI; Uncharacterized protein | ||||
STRING | XP_006443379.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3336 | 27 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-157 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g013523m |
Publications ? help Back to Top | |||
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