PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013523m
Common NameCISIN_1g013552mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 442aa    MW: 49001.3 Da    PI: 8.4814
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013523mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071e-3346100155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  orange1.1g013523m  46 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
                        79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.01443103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-3144101IPR009057Homeodomain-like
SuperFamilySSF466899.14E-1745101IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-2346101IPR006447Myb domain, plants
PfamPF002495.3E-104899IPR001005SANT/Myb domain
PfamPF143791.5E-23187233IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MYHHHQNQGK SMHSSSRMPI PTERHLFLQG GSGPGDSGLV LSTDAKPRLK WTPDLHERFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQANI GNNKIGKKTI  120
SQKSANYQKD QNCNTYLACK AHTGIGGMKF KSSGVGPVTV PGERMPEANA THMNNLSIGP  180
QPNKSLHISE TIQMQIEVQR RLHEQLEVQR HLQLRIEAQG KYLQAVLEKA QETLGRQNLG  240
TAGLEAAKVQ LSELVSKVST QCLNSTFSDL KELQGFCPQQ PQANQPTDCS MDSCLTSCEG  300
SQKDQEIHNG GVRLRPYHGT PTLEPKEIVE EPMLQQTELK WRKDLKESKF LSSIGKDRGP  360
GELSIGSGSF PAGRFKASNE DEHFQDQTNK KPEGAKLENE NLLPEYRLPC FSTKLDLNAH  420
DHENDVASGC KQFDLNGFSW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2146102157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443380.10.0myb-related protein 2
RefseqXP_006479082.10.0myb-related protein 2
RefseqXP_006479083.10.0myb-related protein 2
RefseqXP_024044798.10.0myb-related protein 2
SwissprotQ9SQQ91e-155PHL9_ARATH; Myb-related protein 2
TrEMBLA0A067EVY10.0A0A067EVY1_CITSI; Uncharacterized protein
TrEMBLV4VTW00.0V4VTW0_9ROSI; Uncharacterized protein
STRINGXP_006443379.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33362764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-157G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]