PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g013190m | ||||||||
Common Name | CISIN_1g007099mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 449aa MW: 48404.9 Da PI: 7.2232 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.4 | 9.3e-31 | 190 | 248 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ orange1.1g013190m 190 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 248 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-33 | 174 | 250 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-28 | 182 | 250 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.516 | 184 | 250 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 189 | 249 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 191 | 248 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MNTENQRLRD MLSQVTNNYN ALQMHIIALM QQQQENRRAP ESNQAHEVVE GKDEGKKHDD 60 QVMVPRQFIG LGPSAETDHE VSNCSSDEER TLSGTPPNIV EAASKEHVNS NGKNEIVSFD 120 DQAAAAAAAE NSNGKRIGRE ESPESETQGW GPNNKVQKLS SAKGIDQSNE ATMRKARVSV 180 RARSEAPMIT DGCQWRKYGQ KMAKGNPCPR AYYRCTMAVG CPVRKQVQRC AEDRTILITT 240 YEGNHNHPLP PAAMAMASTT TAAASMLLSG SMSSADGIMN PNLLARAILP CSSSMATISA 300 SAPFPTVTLD LTHSPNPLQL QRQAAQFQVQ FPGQPQNLAS VTNTQLPQVF GQALYNQSKF 360 SGLQLSQNIG SNSQSGSHQT LPPPLQQPQQ LADTVSAATA AITADPNFTA ALAAAITSII 420 GGAQNPFSNN SNNNNRSCII FTNFFFQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-23 | 176 | 252 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1053 | 0.0 | fruit| vegetative meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467403.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9XEC3 | 1e-136 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | A0A067GFB6 | 0.0 | A0A067GFB6_CITSI; Uncharacterized protein | ||||
STRING | XP_006467403.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-109 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g013190m |