PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013055m
Common NameCISIN_1g009051mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 451aa    MW: 48560.5 Da    PI: 6.2529
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013055mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.3e-34250306259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dD ynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  orange1.1g013055m 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHP 306
                        89***************************************.***************8 PP
2WRKY41.33.1e-13420443124
                        ---SS-EEEEEEE--TT-SS-EEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsY 24 
                        ldDgy+WrKYGqK+vkg+++prsY
  orange1.1g013055m 420 LDDGYRWRKYGQKVVKGNPYPRSY 443
                        59********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-29238308IPR003657WRKY domain
PROSITE profilePS5081123.41244308IPR003657WRKY domain
SuperFamilySSF1182902.22E-26245308IPR003657WRKY domain
SMARTSM007745.4E-37249307IPR003657WRKY domain
PfamPF031061.8E-25250306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-15405443IPR003657WRKY domain
SuperFamilySSF1182903.53E-11412443IPR003657WRKY domain
PROSITE profilePS5081116.949415450IPR003657WRKY domain
SMARTSM007746.3E-5420450IPR003657WRKY domain
PfamPF031069.8E-9421443IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAGNEDRAST ASSASLKPST TPSRPTITLP PRASFTESLF NNNGPGSGFG FGFSPGPMTL  60
VSNFFADSDD CKSFSQLLAG AMSSPAAGHL RPNFSEQAER GSGDAEAGDA DFRFKQNRPA  120
GLVIAQPPPI FAVPPGLSPA TLLESPNFGL FSPAQGAFGM THQQALAQVT AQAAQAQSHT  180
QIPAEYPSSL SSAPTTSMTQ VSSLTANTTT NQQMTPLMPD SSVQMKESSD FSHSDQRPQS  240
SSYVSDKPAD DPYNWRKYGQ KHVKGSEFPR SYYKCTHPNC PVKKKVERSL DGQVTEIIYK  300
GQHNHPPPQS NKRAKDAGSL NGNLNNQGSS ELASQLKEGA GYSMSKKDQE SSQVTPENIS  360
GTSDSEEVGD AETAVFEKDE DEPDAKRRST EIRVSEPTAS HRTVTEPRII VQTTSEVDLL  420
DDGYRWRKYG QKVVKGNPYP RSYIFSLVVC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-16250443877Probable WRKY transcription factor 4
2lex_A2e-16250443877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483086.10.0probable WRKY transcription factor 4 isoform X1
RefseqXP_006483087.10.0probable WRKY transcription factor 4 isoform X2
SwissprotQ9XI901e-157WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A067H5R20.0A0A067H5R2_CITSI; Uncharacterized protein
STRINGXP_006483087.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-135WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]