PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g013045m | ||||||||
Common Name | CISIN_1g013045mg, LOC102614949 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 451aa MW: 50631.8 Da PI: 6.1688 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 388 | 420 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + orange1.1g013045m 388 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420 69*****************************87 PP | |||||||
2 | ELK | 28.7 | 3e-10 | 341 | 362 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ orange1.1g013045m 341 ELKHELKQGYKEKIVDIREEIL 362 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-20 | 174 | 218 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.8E-18 | 176 | 217 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.9E-29 | 229 | 284 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-20 | 234 | 283 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 341 | 361 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-6 | 341 | 362 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 341 | 362 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 361 | 424 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-10 | 363 | 428 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 363 | 426 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.49E-11 | 364 | 425 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 368 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-17 | 381 | 420 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 451 aa Download sequence Send to blast |
MAFHHNHLSQ DLPLHHFTDQ QQQQQQQPPS PPQQQHHQHQ QSIETTAPNW LNSALLRSQQ 60 AQQQAAHFSD TNFLNLRTTA NNNNSNNNNT ASDSDASQTP NQWLSRTSSS LLHRNHSDVI 120 DDVTPANDSI IAAVESADLK NANSENMNNA STNNKSEGVV VESGADGVVN WQNARYKAEI 180 LSHPLYEQLL SAHVACLRIA TPVDQLPRID AQLAQSQHVV SKYSALGAGQ GLVTDDKELD 240 QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TGATMSDDDE 300 DQVDSDANLF DGSLEGPDTM GFGPLIPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE 360 ILRKRRAGKL PGDTTSVLKS WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR 420 NWHSNPSTST VLKSKRKRSN AGENSSDRYM * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 364 | 429 | 8 | 73 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 417 | 437 | RKRNWHSNPSTSTVLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.2166 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450342.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_006483429.1 | 0.0 | homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A067DVD8 | 0.0 | A0A067DVD8_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UC09 | 0.0 | V4UC09_9ROSI; Uncharacterized protein | ||||
STRING | XP_006483429.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006450342.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 0.0 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g013045m |
Entrez Gene | 102614949 |
Publications ? help Back to Top | |||
---|---|---|---|
|