PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g013045m
Common NameCISIN_1g013045mg, LOC102614949
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 451aa    MW: 50631.8 Da    PI: 6.1688
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g013045mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-073884202254
                        SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +yp++e++++L +++gL+ +q+ +WF N+R +
  orange1.1g013045m 388 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
                        69*****************************87 PP

2ELK28.73e-10341362122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+++++++++E++
  orange1.1g013045m 341 ELKHELKQGYKEKIVDIREEIL 362
                        9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-20174218IPR005540KNOX1
PfamPF037903.8E-18176217IPR005540KNOX1
SMARTSM012566.9E-29229284IPR005541KNOX2
PfamPF037911.3E-20234283IPR005541KNOX2
PROSITE profilePS512139.969341361IPR005539ELK domain
PfamPF037891.1E-6341362IPR005539ELK domain
SMARTSM011886.1E-4341362IPR005539ELK domain
PROSITE profilePS5007111.758361424IPR001356Homeobox domain
SMARTSM003891.0E-10363428IPR001356Homeobox domain
SuperFamilySSF466895.13E-16363426IPR009057Homeodomain-like
CDDcd000861.49E-11364425No hitNo description
Gene3DG3DSA:1.10.10.609.4E-25368425IPR009057Homeodomain-like
PfamPF059201.3E-17381420IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAFHHNHLSQ DLPLHHFTDQ QQQQQQQPPS PPQQQHHQHQ QSIETTAPNW LNSALLRSQQ  60
AQQQAAHFSD TNFLNLRTTA NNNNSNNNNT ASDSDASQTP NQWLSRTSSS LLHRNHSDVI  120
DDVTPANDSI IAAVESADLK NANSENMNNA STNNKSEGVV VESGADGVVN WQNARYKAEI  180
LSHPLYEQLL SAHVACLRIA TPVDQLPRID AQLAQSQHVV SKYSALGAGQ GLVTDDKELD  240
QFMTHYVLLL CSFKEQLQQH VRVHAMEAVM ACWEIEQSLQ SLTGVSPGEG TGATMSDDDE  300
DQVDSDANLF DGSLEGPDTM GFGPLIPTES ERSLMERVRQ ELKHELKQGY KEKIVDIREE  360
ILRKRRAGKL PGDTTSVLKS WWQSHSKWPY PTEEDKARLV QETGLQLKQI NNWFINQRKR  420
NWHSNPSTST VLKSKRKRSN AGENSSDRYM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12364429873Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417437RKRNWHSNPSTSTVLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.21660.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450342.10.0homeobox protein knotted-1-like 3 isoform X1
RefseqXP_006483429.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A067DVD80.0A0A067DVD8_CITSI; Uncharacterized protein
TrEMBLV4UC090.0V4UC09_9ROSI; Uncharacterized protein
STRINGXP_006483429.10.0(Citrus sinensis)
STRINGXP_006450342.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]