PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g012938m | ||||||||
Common Name | CISIN_1g012938mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 454aa MW: 50696.7 Da PI: 6.3271 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32 | 2.1e-10 | 375 | 412 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e++ LA+++gLt++qV++WF N R + orange1.1g012938m 375 FEHflHPYPNDSEKQLLASQTGLTKNQVSNWFINARVR 412 554458******************************88 PP | |||||||
2 | BELL | 103.8 | 1.2e-33 | 237 | 308 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+qel+ ++akL+slleeV+ +Y+ y++q++ v+ss+e++aglg+ak+YtslAl+a+SrhF +L+dai++qi orange1.1g012938m 237 EKQELHLRIAKLISLLEEVESKYEIYYNQMEEVVSSYEVIAGLGAAKSYTSLALQAMSRHFCSLRDAIISQI 308 689********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.9E-32 | 169 | 306 | IPR006563 | POX domain |
Pfam | PF07526 | 1.6E-38 | 175 | 304 | IPR006563 | POX domain |
SMART | SM00389 | 1.8E-9 | 356 | 420 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.46E-12 | 356 | 417 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-27 | 361 | 422 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.44E-17 | 362 | 424 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.1E-17 | 373 | 412 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 12.017 | 375 | 416 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 454 aa Download sequence Send to blast |
MVSKDSPPNP ASNMLHQFII SDSITAQNLA NQHFDTYGSA LRGNNILPHS FGVLPSIQSL 60 GERISRSMDL VHVHAPAVAE ESSEISHTRH LMDLLGASNE TNDQSQRLSL SLGSHMLVPS 120 GHYNQSPNYL FYGDEAREVC NPGVDQHVSE GYSFNSNSIN RACSIDGTES FAYAVGNSRF 180 LRPAQSLLEE VVNVGKNIDM SDERYISKLY HGSRRGGLRL SSELKAEMCN TGTLSAEKQE 240 LHLRIAKLIS LLEEVESKYE IYYNQMEEVV SSYEVIAGLG AAKSYTSLAL QAMSRHFCSL 300 RDAIISQINI ASRRFYQDLP KISSGLSQLS LFDREARHHR MSLQQLGMFH SQRQVWRPIR 360 GLPETSVGIL RSWLFEHFLH PYPNDSEKQL LASQTGLTKN QVSNWFINAR VRLWKPMIEE 420 MYREEFADSS EDSNPSFAGS SATREGGADQ AGD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-17 | 362 | 423 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 4e-17 | 362 | 423 | 5 | 66 | Homeobox protein Meis2 |
4xrs_A | 4e-17 | 362 | 419 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-17 | 362 | 419 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435067.1 | 0.0 | BEL1-like homeodomain protein 11 isoform X2 | ||||
Refseq | XP_024040268.1 | 0.0 | BEL1-like homeodomain protein 11 isoform X2 | ||||
Refseq | XP_024040269.1 | 0.0 | BEL1-like homeodomain protein 11 isoform X2 | ||||
Swissprot | Q1PFD1 | 1e-105 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A067GYM1 | 0.0 | A0A067GYM1_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NSC9 | 0.0 | A0A2H5NSC9_CITUN; Uncharacterized protein | ||||
STRING | XP_006435067.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9736 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-107 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g012938m |