PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012454m
Common NameCISIN_1g005465mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 464aa    MW: 50831.1 Da    PI: 8.6584
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012454mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.91.1e-081203655
            G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                       m+v+ Lt+e+v+SHLQkYRl
  orange1.1g012454m  1 MNVEKLTRENVASHLQKYRL 20
                       9******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-9125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MNVEKLTREN VASHLQKYRL YLKRISCVAN QQANMVAALG SSDPSYLRMS SVNGLGNYHT  60
VGGPGQFQNS TFRSFPASGM LGRLNAPAGL GMHGLPSSGM IPMRHAQNSD NTTNDQGKFH  120
PALLPGSHSG NILQGMPTSL ELDQLQLNKN ITSISELPNT KDNTTFHVSS GFPDARIGFG  180
RSTNPLLDVN NNPLFLEGHP QEAHSNKMFG NQSLMSLNSG SSSRLPDHGR CNDNWSSAVQ  240
SSGIQPNSFS LGGDYKQPTL HPGHLRDNLS TMALPIGNSP CDVSSLHPLS NRFQDPKADL  300
QFQAVQDAPC RSNVMFSPLN SAVSINGDVG PLGQCLDTNK TFFHRSNEFD SLGQSNFVDH  360
FSMKINEVQR SSMQASSNLK EGYLMGQQKT QGSYISTSVD SLEDLFMSSM VKEVRSYNLA  420
FSSCQNAFIN SFYTTLTIIV KNLLNLFNCL LLWFRTKRRK FSI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450309.10.0two-component response regulator ARR12 isoform X1
RefseqXP_006483453.10.0two-component response regulator ARR12
RefseqXP_024034428.10.0two-component response regulator ARR12 isoform X2
TrEMBLA0A067FMW80.0A0A067FMW8_CITSI; Two-component response regulator
TrEMBLV4TSK60.0V4TSK6_9ROSI; Two-component response regulator
STRINGXP_006450308.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-39response regulator 12