PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g012454m | ||||||||
Common Name | CISIN_1g005465mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 464aa MW: 50831.1 Da PI: 8.6584 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 26.9 | 1.1e-08 | 1 | 20 | 36 | 55 |
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+v+ Lt+e+v+SHLQkYRl orange1.1g012454m 1 MNVEKLTRENVASHLQKYRL 20 9******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-9 | 1 | 25 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MNVEKLTREN VASHLQKYRL YLKRISCVAN QQANMVAALG SSDPSYLRMS SVNGLGNYHT 60 VGGPGQFQNS TFRSFPASGM LGRLNAPAGL GMHGLPSSGM IPMRHAQNSD NTTNDQGKFH 120 PALLPGSHSG NILQGMPTSL ELDQLQLNKN ITSISELPNT KDNTTFHVSS GFPDARIGFG 180 RSTNPLLDVN NNPLFLEGHP QEAHSNKMFG NQSLMSLNSG SSSRLPDHGR CNDNWSSAVQ 240 SSGIQPNSFS LGGDYKQPTL HPGHLRDNLS TMALPIGNSP CDVSSLHPLS NRFQDPKADL 300 QFQAVQDAPC RSNVMFSPLN SAVSINGDVG PLGQCLDTNK TFFHRSNEFD SLGQSNFVDH 360 FSMKINEVQR SSMQASSNLK EGYLMGQQKT QGSYISTSVD SLEDLFMSSM VKEVRSYNLA 420 FSSCQNAFIN SFYTTLTIIV KNLLNLFNCL LLWFRTKRRK FSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450309.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Refseq | XP_006483453.1 | 0.0 | two-component response regulator ARR12 | ||||
Refseq | XP_024034428.1 | 0.0 | two-component response regulator ARR12 isoform X2 | ||||
TrEMBL | A0A067FMW8 | 0.0 | A0A067FMW8_CITSI; Two-component response regulator | ||||
TrEMBL | V4TSK6 | 0.0 | V4TSK6_9ROSI; Two-component response regulator | ||||
STRING | XP_006450308.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 3e-39 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g012454m |