PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g012449m | ||||||||
Common Name | CISIN_1g008254mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 464aa MW: 51854.5 Da PI: 6.7583 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3.1e-28 | 221 | 275 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ orange1.1g012449m 221 KMKVDWTPELHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 275 5689*****************.********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.114 | 218 | 277 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 219 | 278 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-18 | 220 | 278 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-25 | 221 | 275 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.7E-9 | 224 | 273 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MVMNQLFDNN FQLGAVEFLR KPLSEDKLRN LWQHVVHKAF NAGGSALSDS LKPVKESVVS 60 MLHLKLENGE SKNEKSENTE YVLVPQQSDN EQSVPNDKYP APSTPQLKQG GRLLDDIDCQ 120 DNTNFSTEKE SAEQDGESKF VETTCGNSIA EGTLQEDKPQ RPRETIVKEE HDPTNGSKTE 180 CNMLPLPYEK DNLKGSNCVI ENPSKASGLQ NSCGNKANRK KMKVDWTPEL HKKFVQAVEQ 240 LGVDQAIPSR ILELMKVEGL TRHNVASHLQ KYRMHRRHIL PKEDDRKWPH ARDQMLRNYY 300 PHKPIMAFPP YHSNHLVPTG PVYPVWGAPS NHLAAVQMWA PPGYPPWQQA ESWNWKPYPG 360 MPADAWGCPV MPLPNGPYSS FPQGASGYHN SGVDDNSYAM PQNSVDLHPA EEVIDKVVKE 420 AISKPWLPLP LGLKPPSADS VLAELSRQGI STIPPRINGS HPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-16 | 226 | 275 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17638 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436789.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_006485404.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_006485405.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-103 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A067DLQ3 | 0.0 | A0A067DLQ3_CITSI; Uncharacterized protein | ||||
STRING | XP_006485404.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436789.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-105 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g012449m |
Publications ? help Back to Top | |||
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