PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012387m
Common NameCISIN_1g012387mg, LOC102631316
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 465aa    MW: 50763.6 Da    PI: 8.3198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012387mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15295340555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  orange1.1g012387m 295 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 340
                        9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-19288352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13295340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-16295344No hitNo description
Gene3DG3DSA:4.10.280.102.9E-18295348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-18296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MSQCVPSWDL DENYPNNCRA SLRSRSNSTA PDVPMLELDY EVAELTWENG QLAMHGLGPP  60
RVPAKAAANN PSPTKNTCSG TLESIVNQAT SLPQAQRNGK PPLLDEFATA PCCFHQQRPS  120
MTTMDALVPC SNRRSEERTT QVMDPAPRVG GTRSIRVGSC SGPVPLPIPD STKDDDVLNG  180
KRARVARVPV APEWSSRDQS FSGSATFGRE SQRVSVTHDT YDMDMDMGVG FTGTSMGSPE  240
NTSSAKQGNK ATTADDHDSV CHSRPLREAG DEEYKKKGNG KSTISTKRSR AAAIHNQSER  300
KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ AQVQVMSRMN MPPMMLPMAM  360
QQQLQMSMLS SMGMGMGMGM GMGVMDMNSM SRPNITSMPP LLHPFLPLAS WDGLGDRLQA  420
SPMTDPLSTF LACQPQAASM DAYNRMAAMY QQMQQQPPAS SSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303ERKRRD
2299304RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.37630.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445332.10.0transcription factor UNE10
RefseqXP_006490847.10.0transcription factor UNE10
SwissprotQ8GZ381e-108UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A067HD370.0A0A067HD37_CITSI; Uncharacterized protein
TrEMBLV4TY890.0V4TY89_9ROSI; Uncharacterized protein
STRINGXP_006490847.10.0(Citrus sinensis)
STRINGXP_006445332.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-97bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]