PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g012287m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 467aa    MW: 50509.9 Da    PI: 9.7902
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g012287mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.77.9e-16261316459
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                         kr rr+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k+l  +++++ + 
  orange1.1g012287m 261 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLKRLTDISQKYNEA 316
                        79*****************************************9999999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-19258322IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-12259314No hitNo description
PROSITE profilePS5021711.679260315IPR004827Basic-leucine zipper domain
PfamPF001701.7E-13261314IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.2E-11262312No hitNo description
PROSITE patternPS000360265280IPR004827Basic-leucine zipper domain
PfamPF124986.3E-44329455IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MTPIRILFIL FLTHPQTSKP KNKTARITKV TKIWRKMDRV FSVGEISEQF WSNPPDASSK  60
MNRSESEWAF QRFLQEAQQP TSSGDSKNDS VVEIKSAHIS NNNNNNNNNT DNQNDNVKAG  120
GGGGNVSKAA TSALSFDGTQ NLEDYQAVLK SKLNLACAAV ALSRASCARP QDTADRADSG  180
SQSSNTSQLG SQAPKGPVHD LSRSQNKDVN GLHGIPSIST TLKKPLVPVR SATSGSSRDL  240
SEDDEAEGET ATTENMDPVD AKRVRRMLSN RESARRSRRR KQAHLTELET QVSQLRVENS  300
SLLKRLTDIS QKYNEAAVDN RVLKADVETL RAKVKMAEET VKRITGLNPL LQGSPEMSSM  360
SMSSFGGSHS DTSADATVPL QDDPKHHFFQ PPSDNPVSSH DLRVNNALSD ISSVENVQPN  420
AGATAAASGN KIGRTVSLQR VASLEHLQKR IRGGVSPCGP NSSGEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274281RRSRRRKQ
2276281SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432930.10.0light-inducible protein CPRF2
RefseqXP_006471677.20.0light-inducible protein CPRF2
SwissprotQ990901e-129CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLV4T4710.0V4T471_9ROSI; Uncharacterized protein
STRINGXP_006432930.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-60bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]