PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g012160m | ||||||||
Common Name | CISIN_1g012156mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 471aa MW: 49380.6 Da PI: 6.3712 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.6e-12 | 263 | 308 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq orange1.1g012160m 263 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 308 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-17 | 256 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.52E-13 | 256 | 312 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 258 | 307 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 260 | 317 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 263 | 308 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MQPCSSGGEM QGISSLLSNG SHEQQSQIHQ SATFDPTSQD DFLEQMLSSL PSCSWTDLKS 60 PWGVVDLNPN NNNNNINNKQ PRDLSDETAP STTQENNVPA GFQFDESMIL ASKMRQHQIS 120 GNTGSGNNNS AAAKFMMQQQ QQQIMMAAAR GGIGLPLSLG NGGDNDIVDV SSFKSQQGGD 180 GSVQALYNGF TGSLHGSTQP QHFHHLQVRS MPGQTFGAPG PVMNQTQAQA SGSTGGGGGG 240 GNTPAQQPKQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI 300 IDYVKFLQLQ VKVLSMSRLG GAAAVAPLVA DMSSEGGGGG DCIQANGRNP NGAQTTSAND 360 SLTVTEHQVA KLMEEDMGSA MQYLQGKGLC LMPISLATAI STATCHSRNP IISTSNNNNN 420 NGNPHHNPLL QSNGEGPTSP SMSVLTVQSA TMGNGGADGS VKDAASVSKP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 272 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2198 | 0.0 | callus| flower| fruit| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006473971.1 | 0.0 | transcription factor bHLH66 | ||||
Swissprot | Q9ZUG9 | 1e-88 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A067EWC5 | 0.0 | A0A067EWC5_CITSI; Uncharacterized protein | ||||
STRING | XP_006473971.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 3e-69 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g012160m |
Publications ? help Back to Top | |||
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