PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g012118m | ||||||||
Common Name | CISIN_1g012118mg, LOC102630141 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 471aa MW: 53236.9 Da PI: 7.0378 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 114.3 | 1.3e-35 | 49 | 192 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+Ptd+el+ ++L++kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ orange1.1g012118m 49 LPAGVKFDPTDQELI-DHLEAKVEAKDmvkphplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecd 138 799************.99*********77776553333333766646**********.555666799******************7333455 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l orange1.1g012118m 139 lqggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 192 5544778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-38 | 44 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.812 | 49 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-16 | 50 | 192 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MSGSKSNLGT NISSSDLIDA KLEEHQLCGS KQCPGCGHKL EAKPDWLGLP AGVKFDPTDQ 60 ELIDHLEAKV EAKDMVKPHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG LSRHFFHRPS 120 KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMVNGK QKGCKKILVL YTNFGKNRKP 180 EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS EKSATTGEGS SDPNSRRDSG 240 SGSCSSKEMI PHRDHEVSGA QVAAAMSSYG AIDMQQLKSD HFSFVPFRKS FDEVGIGEAS 300 TAREAPAHGT CEDIRDHHQR PHHHLAHDHR QQQQQHQQQH QQQQQQQHHT HHQQIATTAF 360 HISRPSHPIS TIISPSPLHH TSIILDEDSY HVSRIMLQNE SFQQQQQQQQ QQQQHHKLGG 420 RSASGLEELI MGCTSSSDIK EESSMTNPQE AEWLKYSSFW PDPDNQDHHG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.9819 | 3e-44 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006475352.1 | 0.0 | NAC domain-containing protein 75 | ||||
Refseq | XP_006475353.1 | 0.0 | NAC domain-containing protein 75 | ||||
Refseq | XP_024953323.1 | 0.0 | NAC domain-containing protein 75 | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | A0A067EL13 | 0.0 | A0A067EL13_CITSI; Uncharacterized protein | ||||
STRING | XP_006475352.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6635 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-145 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g012118m |
Entrez Gene | 102630141 |
Publications ? help Back to Top | |||
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